Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria

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Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria is …
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scholarly articleQ13442814

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P356DOI10.1128/JB.183.21.6384-6393.2001
P932PMC publication ID100134
P698PubMed publication ID11591683

P2093author name stringB L Wanner
A Haldimann
P2860cites workShotgun DNA sequencing using cloned DNase I-generated fragmentsQ24594857
Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectorsQ26778475
Structure-based redesign of corepressor specificity of the Escherichia coli purine repressor by substitution of residue 190Q27748833
The complete genome sequence of Escherichia coli K-12Q27860542
Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoterQ27860697
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinantQ29615039
Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettesQ29615258
Mapping and molecular cloning of the phn (psiD) locus for phosphonate utilization in Escherichia coliQ33892272
Chromosomal integration of heterologous DNA in Escherichia coli with precise removal of markers and replicons used during construction.Q33993261
Linkage map of Escherichia coli K-12, edition 10: the traditional mapQ34010050
Chromosomal insertion sites for phages and plasmidsQ35536155
Lambdoid phages as elements of bacterial genomes (integrase/phage21/Escherichia coli K-12/icd gene)Q35611758
Integration specificities of two lambdoid phages (21 and e14) that insert at the same attB siteQ35630251
Construction of an Escherichia coli K-12 ada deletion by gene replacement in a recD strain reveals a second methyltransferase that repairs alkylated DNAQ36209000
Molecular cloning of Mu d(bla lacZ) transcriptional and translational fusionsQ36236684
In vivo characterization of the type A and B vancomycin-resistant enterococci (VRE) VanRS two-component systems in Escherichia coli: a nonpathogenic model for studying the VRE signal transduction pathwaysQ36327115
Cross-talk between the histidine protein kinase VanS and the response regulator PhoB. Characterization and identification of a VanS domain that inhibits activation of PhoB.Q36681707
Altered recognition mutants of the response regulator PhoB: a new genetic strategy for studying protein-protein interactionsQ36837468
Use of an inducible site-specific recombinase to probe the structure of protein-DNA complexes involved in F plasmid partition in Escherichia coliQ38310900
Use of the rep technique for allele replacement to construct new Escherichia coli hosts for maintenance of R6K gamma origin plasmids at different copy numbersQ38311874
Towards single-copy gene expression systems making gene cloning physiologically relevant: lambda InCh, a simple Escherichia coli plasmid-chromosome shuttle systemQ39498918
Use of new methods for construction of tightly regulated arabinose and rhamnose promoter fusions in studies of the Escherichia coli phosphate regulon.Q39564896
Transcriptional regulation of the Enterococcus faecium BM4147 vancomycin resistance gene cluster by the VanS-VanR two-component regulatory system in Escherichia coli K-12.Q39847254
Convenient and reversible site-specific targeting of exogenous DNA into a bacterial chromosome by use of the FLP recombinase: the FLIRT systemQ39847367
The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levelsQ39928885
Molecular cloning and physical mapping of the otsBA genes, which encode the osmoregulatory trehalose pathway of Escherichia coli: evidence that transcription is activated by katF (AppR)Q39934954
In vivo excision and amplification of large segments of the Escherichia coli genomeQ40229366
Homogeneous expression of the P(BAD) promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporterQ43820094
Escherichia coli genome targeting, I. Cre-lox-mediated in vitro generation of ori- plasmids and their in vivo chromosomal integration and retrievalQ44791864
The phi 80 and P22 attachment sites. Primary structure and interaction with Escherichia coli integration host factorQ48379909
Homologs of the vancomycin resistance D-Ala-D-Ala dipeptidase VanX in Streptomyces toyocaensis, Escherichia coli and Synechocystis: attributes of catalytic efficiency, stereoselectivity and regulation with implications for function.Q54123772
Overlapping and separate controls on the phosphate regulon in Escherichia coli K12Q67296612
Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificityQ69354086
Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operatorQ71082929
Broad-host-range cloning and cassette vectors based on the R388 trimethoprim resistance geneQ71303179
Phosphate-controlled gene expression in Escherichia coli K12 using Mudl-directed lacZ fusionsQ71625033
Identifying Determinants of Recombination Specificity: Construction and Characterization of Chimeric Bacteriophage IntegrasesQ72057522
Construction of new beta-glucuronidase cassettes for making transcriptional fusions and their use with new methods for allele replacementQ72841100
P433issue21
P407language of work or nameEnglishQ1860
P921main subjectbacteriaQ10876
P304page(s)6384-6393
P577publication date2001-11-01
P1433published inJournal of BacteriologyQ478419
P1476titleConditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria
P478volume183

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cites work (P2860)
Q40031715A BTP1 prophage gene present in invasive non-typhoidal Salmonella determines composition and length of the O-antigen of the lipopolysaccharide
Q38409720A BioBrick™-Compatible Vector for Allelic Replacement Using the XylE Gene as Selection Marker
Q34547514A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response
Q90253583A PopZ-linked apical recruitment assay for studying protein-protein interactions in the bacterial cell envelope
Q34395186A bidirectional fluorescent two-hybrid system for monitoring protein-protein interactions
Q54515474A comparative study of variation in codon 33 of the rpoS gene in Escherichia coli K12 stocks: implications for the synthesis of σs
Q50521602A convenient method for multiple insertions of desired genes into target loci on the Escherichia coli chromosome.
Q35192443A fail-safe mechanism in the septal ring assembly pathway generated by the sequential recruitment of cell separation amidases and their activators
Q24682421A natural genetic code expansion cassette enables transmissible biosynthesis and genetic encoding of pyrrolysine
Q49851989A network of regulators promotes dehydration tolerance in Escherichia coli.
Q34330387A new activity for an old enzyme: Escherichia coli bacterial alkaline phosphatase is a phosphite-dependent hydrogenase
Q42535677A new glimpse of FadR-DNA crosstalk revealed by deep dissection of the E. coli FadR regulatory protein
Q35433183A new regulatory mechanism for bacterial lipoic acid synthesis.
Q34237888A nutrient-tunable bistable switch controls motility in Salmonella enterica serovar Typhimurium.
Q27649896A peptide deformylase-ribosome complex reveals mechanism of nascent chain processing
Q34518644A place for everything: chromosomal integration of large constructs
Q28817594A population-based temporal logic gate for timing and recording chemical events
Q35546037A predicted ABC transporter, FtsEX, is needed for cell division in Escherichia coli
Q35311391A rapid and reliable strategy for chromosomal integration of gene(s) with multiple copies
Q35885858A set of powerful negative selection systems for unmodified Enterobacteriaceae
Q40980796A standard vector for the chromosomal integration and characterization of BioBrick™ parts in Escherichia coli
Q35683452A strategy for enhanced circular DNA construction efficiency based on DNA cyclization after microbial transformation
Q35800309A strategy of gene overexpression based on tandem repetitive promoters in Escherichia coli
Q46366557A synthetic gene-metabolic oscillator.
Q33422974A toxin-antitoxin system promotes the maintenance of an integrative conjugative element
Q40897496A versatile element for gene addition in bacterial chromosomes
Q34946239A whole-cell biosensor for the detection of gold
Q37232478ATP-binding site lesions in FtsE impair cell division.
Q54384011Activation of the AtoSC two-component system in the absence of the AtoC N-terminal receiver domain in E. coli.
Q33582122Alternative sigma factor sigmaH modulates prophage integration and excision in Staphylococcus aureus
Q36704156Amino acids important for DNA recognition by the response regulator OmpR.
Q40101578Amplifying genetic logic gates
Q35546844An ATP-binding cassette transporter-like complex governs cell-wall hydrolysis at the bacterial cytokinetic ring.
Q35762450An Integrated System for Precise Genome Modification in Escherichia coli
Q42042348Anaerobic obligatory xylitol production in Escherichia coli strains devoid of native fermentation pathways
Q45165817Analysis of the role of intraprotein electron transfer in photoreactivation by DNA photolyase in vivo
Q37264341Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins.
Q64076506Application of leucine dehydrogenase Bcd from for l-valine synthesis in under microaerobic conditions
Q37893526Application of the bacteriophage Mu-driven system for the integration/amplification of target genes in the chromosomes of engineered Gram-negative bacteria--mini review
Q54201986Asymmetric polar localization dynamics of the serine chemoreceptor protein Tsr in Escherichia coli.
Q24614165Bacterial actin MreB assembles in complex with cell shape protein RodZ.
Q34160920Bacterial sugar utilization gives rise to distinct single-cell behaviours
Q38179994Bacteriophage recombination systems and biotechnical applications.
Q33657298BglBricks: A flexible standard for biological part assembly
Q48251407Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity
Q40862607Binding of Shewanella FadR to the fabA fatty acid biosynthetic gene: implications for contraction of the fad regulon
Q47131320Biosensor-aided high-throughput screening of hyper-producing cells for malonyl-CoA-derived products.
Q61807409Biosensor-guided improvements in salicylate production by recombinant Escherichia coli
Q91671413CRIMoClo plasmids for modular assembly and orthogonal chromosomal integration of synthetic circuits in Escherichia coli
Q38290237Cadmium toxicity in glutathione mutants of Escherichia coli
Q37065875Cell death from antibiotics without the involvement of reactive oxygen species
Q42125850CfaD-dependent expression of a novel extracytoplasmic protein from enterotoxigenic Escherichia coli.
Q39897568Characterization of a mannose utilization system in Bacillus subtilis
Q34247945Characterization of an inducible promoter in different DNA copy number conditions.
Q34760785Characterization of flavin-based fluorescent proteins: an emerging class of fluorescent reporters
Q34077717Characterization of the roles of the catalytic domains of Mycobacterium tuberculosis ligase D in Ku-dependent error-prone DNA end joining
Q34565389Chromosomal evolution of Escherichia coli for the efficient production of lycopene
Q33534627Ciprofloxacin causes persister formation by inducing the TisB toxin in Escherichia coli
Q41372447Circuitry Linking the Catabolite Repression and Csr Global Regulatory Systems of Escherichia coli.
Q35046553Circuitry linking the Csr and stringent response global regulatory systems
Q42777763Circuitry linking the global Csr and σE-dependent cell envelope stress response systems.
Q49025389Clonetegration Using OSIP Plasmids: One-Step DNA Assembly and Site-Specific Genomic Integration in Bacteria.
Q46353242Co-utilization of hexoses by a microconsortium of sugar-specific E. coli strains
Q33570169Common requirement for the relaxosome of plasmid R1 in multiple activities of the conjugative type IV secretion system
Q40222146Complete nucleotide sequence and annotation of the temperate corynephage ϕ16 genome.
Q38664185Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.
Q35296562Complex regulation of the global regulatory gene csrA: CsrA-mediated translational repression, transcription from five promoters by Eσ⁷⁰ and Eσ(S), and indirect transcriptional activation by CsrA
Q35196256Compounds targeting disulfide bond forming enzyme DsbB of Gram-negative bacteria
Q37104508Conjugative DNA Transfer Is Enhanced by Plasmid R1 Partitioning Proteins
Q36517713Construction and characterization of an in-vivo linear covalently closed DNA vector production system.
Q22122301Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Q48298401Construction of targeted single copy lac fusions using lambda Red and FLP-mediated site-specific recombination in bacteria
Q37596245Continuous control in bacterial regulatory circuits
Q50044494Continuous control of flagellar gene expression by the σ28-FlgM regulatory circuit in Salmonella enterica
Q33609856Creating Single-Copy Genetic Circuits
Q34222163Critical design criteria for minimal antibiotic‐free plasmid vectors necessary to combine robust RNA Pol II and Pol III‐mediated eukaryotic expression with high bacterial production yields
Q36012615Cro's role in the CI Cro bistable switch is critical for {lambda}'s transition from lysogeny to lytic development
Q36070050Cross Talk Inhibition Nullified by a Receiver Domain Missense Substitution
Q34431014Crosstalk of Escherichia coli FadR with global regulators in expression of fatty acid transport genes
Q34496912CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation of pnp Transcripts That Have Been Previously Processed by RNase III and PNPase
Q43208080CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage.
Q35530981CsrA represses translation of sdiA, which encodes the N-acylhomoserine-L-lactone receptor of Escherichia coli, by binding exclusively within the coding region of sdiA mRNA.
Q43192580Cyclic AMP receptor protein-dependent repression of heat-labile enterotoxin
Q36155174Cysteine catabolism and cysteine desulfhydrase (CdsH/STM0458) in Salmonella enterica serovar typhimurium
Q33845937Daughter cell separation is controlled by cytokinetic ring-activated cell wall hydrolysis
Q44885753Deciphering interactions used by the influenza virus NS1 protein to silence the host antiviral sensor protein RIG-I using a bacterial reverse two-hybrid system
Q35113909Design and application of a novel high-throughput screening technique for 1-deoxynojirimycin
Q36845531Determination of antibiotic hypersensitivity among 4,000 single-gene-knockout mutants of Escherichia coli
Q91594957Developing a highly efficient hydroxytyrosol whole-cell catalyst by de-bottlenecking rate-limiting steps
Q47104312Development of a high efficiency integration system and promoter library for rapid modification of Pseudomonas putida KT2440.
Q44708928Development of a novel method of lytic phage delivery by use of a bacteriophage P22 site-specific recombination system
Q41921895Development of pVCR94ΔX from Vibrio cholerae, a prototype for studying multidrug resistant IncA/C conjugative plasmids.
Q37156985Differences in hydrogenase gene expression between Methanosarcina acetivorans and Methanosarcina barkeri
Q35668053Dimerization of the bacterial biotin carboxylase subunit is required for acetyl coenzyme A carboxylase activity in vivo
Q33881285Direct and convenient measurement of plasmid stability in lab and clinical isolates of E. coli.
Q42243754Directed evolution of a thermostable phosphite dehydrogenase for NAD(P)H regeneration
Q38897833Directed evolution of λ integrase activity and specificity by genetic derepression
Q37732584Disassembly of the divisome in Escherichia coli: evidence that FtsZ dissociates before compartmentalization
Q33558045Discovery and characterization of three new Escherichia coli septal ring proteins that contain a SPOR domain: DamX, DedD, and RlpA
Q33928870DsbL and DsbI contribute to periplasmic disulfide bond formation in Salmonella enterica serovar Typhimurium
Q37008947Dual posttranscriptional regulation via a cofactor-responsive mRNA leader
Q30847197Dual-In/Out strategy for genes integration into bacterial chromosome: a novel approach to step-by-step construction of plasmid-less marker-less recombinant E. coli strains with predesigned genome structure.
Q49953352Dynamic Measures of Flagellar Gene Expression
Q91977913Dynamic control of toxic natural product biosynthesis by an artificial regulatory circuit
Q43473881Dynamic enzyme docking to the ribosome coordinates N-terminal processing with polypeptide folding.
Q35739192Dynamic subcellular localization of a respiratory complex controls bacterial respiration.
Q37533617Dynamics of the serine chemoreceptor in the Escherichia coli inner membrane: a high-speed single-molecule tracking study
Q54338814E. coli LoiP (YggG), a metalloprotease hydrolyzing Phe-Phe bonds.
Q53295264Effects of chromosomal gene copy number and locations on polyhydroxyalkanoate synthesis by Escherichia coli and Halomonas sp.
Q34317645Effects of the P1 plasmid centromere on expression of P1 partition genes
Q35074922Effects of the global regulator CsrA on the BarA/UvrY two-component signaling system
Q41880930Electrode-assisted acetoin production in a metabolically engineered Escherichia coli strain
Q89685405Engineered probiotics for local tumor delivery of checkpoint blockade nanobodies
Q46776849Engineering complex biological systems in bacteria through recombinase-assisted genome engineering
Q59260608Engineering orthogonal synthetic timer circuits based on extracytoplasmic function σ factors
Q84653141Enhanced co-production of hydrogen and poly-(R)-3-hydroxybutyrate by recombinant PHB producing E. coli over-expressing hydrogenase 3 and acetyl-CoA synthetase
Q53303322Enhanced production of poly-3-hydroxybutyrate by Escherichia coli over-expressing multiple copies of NAD kinase integrated in the host genome.
Q42248495Enterohemorrhagic Escherichia coli O157:H7 gal mutants are sensitive to bacteriophage P1 and defective in intestinal colonization
Q47837168Escherichia coli cytochrome c peroxidase is a respiratory oxidase that enables the use of hydrogen peroxide as a terminal electron acceptor
Q34414825Escherichia coli flagellar genes as target sites for integration and expression of genetic circuits.
Q37713153Escherichia coli isolate for studying colonization of the mouse intestine and its application to two-component signaling knockouts
Q24676980Escherichia coli phnN , Encoding Ribose 1,5-Bisphosphokinase Activity (Phosphoribosyl Diphosphate Forming): Dual Role in Phosphonate Degradation and NAD Biosynthesis Pathways
Q39607542Establishing and maintaining sequestration of Dam target sites for phase variation of agn43 in Escherichia coli.
Q43932960Evidence for function overlapping of CymA and the cytochrome bc1 complex in the Shewanella oneidensis nitrate and nitrite respiration
Q35034394Evolutionary tuning of protein expression levels of a positively autoregulated two-component system
Q36760543Exoprotein production correlates with morphotype changes of nonmotile Shewanella oneidensis mutants.
Q46893998Expanding the chemical diversity of natural esters by engineering a polyketide-derived pathway into Escherichia coli.
Q33855616Expression levels influence ribosomal frameshifting at the tandem rare arginine codons AGG_AGG and AGA_AGA in Escherichia coli
Q38300978Expression of Mycobacterium tuberculosis Ku and Ligase D in Escherichia coli results in RecA and RecB-independent DNA end-joining at regions of microhomology
Q33962924ExsA recruits RNA polymerase to an extended -10 promoter by contacting region 4.2 of sigma-70
Q42125249FimA, FimF, and FimH are necessary for assembly of type 1 fimbriae on Salmonella enterica serovar Typhimurium
Q37336075FimY does not interfere with FimZ-FimW interaction during type 1 fimbria production by Salmonella enterica serovar Typhimurium
Q36747807FliZ Is a posttranslational activator of FlhD4C2-dependent flagellar gene expression
Q34465314Fluorescence correlation spectroscopy measurements of the membrane protein TetA in Escherichia coli suggest rapid diffusion at short length scales
Q28272542Function and regulation of isoforms of carbon monoxide dehydrogenase/acetyl coenzyme A synthase in Methanosarcina acetivorans
Q33635059Functional profiling of p53-binding sites in Hdm2 and Hdmx using a genetic selection system
Q34747040Functional roles for the GerE-family carboxyl-terminal domains of nitrate response regulators NarL and NarP of Escherichia coli K-12
Q41911664Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD.
Q30376672Generic plasmid DNA production platform incorporating low metabolic burden seed-stock and fed-batch fermentation processes.
Q46314604Genetic analysis of the Salmonella transcription factor HilA.
Q34675381Genetic analysis of the cell division protein FtsI (PBP3): amino acid substitutions that impair septal localization of FtsI and recruitment of FtsN.
Q38037552Genetic manipulation of Staphylococci-breaking through the barrier.
Q35140832Genetic strategies for antibacterial drug discovery
Q34177935Genetics and Regulation of the Major Enzymes of Alanine Synthesis inEscherichia coli
Q41746387Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12
Q36310375Global analysis of translation termination in E. coli.
Q33724452Global effects of the DEAD-box RNA helicase DeaD (CsdA) on gene expression over a broad range of temperatures
Q33432897Guidance for data collection and computational modelling of regulatory networks
Q49597228HilE Regulates HilD by Blocking DNA Binding in Salmonella enterica serovar Typhimurium
Q34789422Horizontally acquired glycosyltransferase operons drive salmonellae lipopolysaccharide diversity
Q37252991How Escherichia coli tolerates profuse hydrogen peroxide formation by a catabolic pathway
Q34637796Hydrogen peroxide inactivates the Escherichia coli Isc iron-sulphur assembly system, and OxyR induces the Suf system to compensate
Q92772472Identification of new components of the RipC-FtsEX cell separation pathway of Corynebacterineae
Q28486179Identification of the SlmA active site responsible for blocking bacterial cytokinetic ring assembly over the chromosome
Q33330047Identifying small-molecule modulators of protein-protein interactions
Q34045588Imaging OmpR binding to native chromosomal loci in Escherichia coli
Q44114736Implementation of stable and complex biological systems through recombinase-assisted genome engineering
Q53436924Improved NADPH supply for xylitol production by engineered Escherichia coli with glycolytic mutations.
Q37399763Improved antibiotic-free DNA vaccine vectors utilizing a novel RNA based plasmid selection system
Q36256811Improving key enzyme activity in phenylpropanoid pathway with a designed biosensor
Q36176596In vivo visualization of type II plasmid segregation: bacterial actin filaments pushing plasmids
Q40389062Inhibition of CRISPR-Cas9 with Bacteriophage Proteins
Q64927546Inhibition of low-density lipoprotein receptor degradation with a cyclic peptide that disrupts the homodimerization of IDOL E3 ubiquitin ligase.
Q28257999Intracellular detection and evolution of site-specific proteases using a genetic selection system
Q33570133Intracellular hydrogen peroxide and superoxide poison 3-deoxy-D-arabinoheptulosonate 7-phosphate synthase, the first committed enzyme in the aromatic biosynthetic pathway of Escherichia coli
Q54348862Involvement of AtoSC two-component system in Escherichia coli flagellar regulon.
Q42126464Involvement of Escherichia coli DNA polymerase IV in tolerance of cytotoxic alkylating DNA lesions in vivo.
Q36996756Knock-in/Knock-out (KIKO) vectors for rapid integration of large DNA sequences, including whole metabolic pathways, onto the Escherichia coli chromosome at well-characterised loci
Q36209777Long-Term Stable and Tightly Controlled Expression of Recombinant Proteins in Antibiotics-Free Conditions
Q41815173LytM-domain factors are required for daughter cell separation and rapid ampicillin-induced lysis in Escherichia coli.
Q37622760MISSA 2.0: an updated synthetic biology toolbox for assembly of orthogonal CRISPR/Cas systems
Q83118651MISSA is a highly efficient in vivo DNA assembly method for plant multiple-gene transformation
Q37418527Manganese import is a key element of the OxyR response to hydrogen peroxide in Escherichia coli
Q51363477MarRA, SoxSR, and Rob encode a signal dependent regulatory network in Escherichia coli.
Q41694474MazF activation promotes translational heterogeneity of the grcA mRNA in Escherichia coli populations.
Q86382031Metabolic engineering of Escherichia coli to produce zeaxanthin
Q33519503Mobile antibiotic resistance encoding elements promote their own diversity
Q50238026Molecular Cloning Designer Simulator (MCDS): All-in-one molecular cloning and genetic engineering design, simulation and management software for complex synthetic biology and metabolic engineering projects.
Q93221698Molecular and Functional Insights into the Regulation of d-Galactonate Metabolism by the Transcriptional Regulator DgoR in Escherichia coli
Q46406220Molecular characterization and verification of azido-3,8-dideoxy-d-manno-oct-2-ulosonic acid incorporation into bacterial lipopolysaccharide
Q33210306Molecular cloning, sequence analysis, and heterologous expression of the phosphinothricin tripeptide biosynthetic gene cluster from Streptomyces viridochromogenes DSM 40736.
Q37328191Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression
Q48515695Mu-driven transposition of recombinant mini-Mu unit DNA in the Corynebacterium glutamicum chromosome
Q90001385Multidrug Resistance Regulators MarA, SoxS, Rob, and RamA Repress Flagellar Gene Expression and Motility in Salmonella enterica Serovar Typhimurium
Q44594054Mycobacterium smegmatis BioQ defines a new regulatory network for biotin metabolism
Q33979263Mycobacterium tuberculosis Ku can bind to nuclear DNA damage and sensitize mammalian cells to bleomycin sulfate
Q40545064Mycobacterium tuberculosis and Mycobacterium marinum non-homologous end-joining proteins can function together to join DNA ends in Escherichia coli
Q37200759New methods for tightly regulated gene expression and highly efficient chromosomal integration of cloned genes for Methanosarcina species.
Q90057425Nitric oxide disrupts bacterial cytokinesis by poisoning purine metabolism
Q41911689NlpD links cell wall remodeling and outer membrane invagination during cytokinesis in Escherichia coli
Q38792216Novel Technologies for Optimal Strain Breeding
Q27675754Nuclear Magnetic Resonance Solution Structure of the Peptidoglycan-Binding SPOR Domain from Escherichia coli DamX: Insights into Septal Localization
Q60303471ORBIT: a New Paradigm for Genetic Engineering of Mycobacterial Chromosomes
Q47929529Operon structure and cotranslational subunit association direct protein assembly in bacteria.
Q39722401Optimization and Characterization of the Synthetic Secondary Chromosome synVicII in Escherichia coli
Q58749112Overcoming the Cost of Positive Autoregulation by Accelerating the Response with a Coupled Negative Feedback
Q35626014Oxygen-Dependent Cell-to-Cell Variability in the Output of the Escherichia coli Tor Phosphorelay
Q54473561P1 plasmid partition: in vivo evidence for the ParA- and ParB-mediated formation of an anchored parS complex in the absence of a partner parS.
Q30536933Parallel in vivo DNA assembly by recombination: experimental demonstration and theoretical approaches
Q34150786Pathogenicity-associated islands in extraintestinal pathogenic Escherichia coli are fitness elements involved in intestinal colonization
Q36156174Pathway and enzyme redundancy in putrescine catabolism in Escherichia coli
Q34050856PdhR, the pyruvate dehydrogenase repressor, does not regulate lipoic acid synthesis
Q91701461Perforin-2 Breaches the Envelope of Phagocytosed Bacteria Allowing Antimicrobial Effectors Access to Intracellular Targets
Q97568978Phenotypic effects of paralogous ribosomal proteins bL31A and bL31B in E. coli
Q42929612Pho regulon promoter-mediated transcription of the key pathway gene aroG Fbr improves the performance of an l-phenylalanine-producing Escherichia coli strain
Q92641059PhoP-Mediated Repression of the SPI1 Type 3 Secretion System in Salmonella enterica Serovar Typhimurium
Q42463484Phosphorylation-independent dimer-dimer interactions by the enhancer-binding activator NtrC of Escherichia coli: a third function for the C-terminal domain.
Q36227468Physiological Roles and Adverse Effects of the Two Cystine Importers of Escherichia coli
Q39839158Plasmid DNA fermentation strain and process‐specific effects on vector yield, quality, and transgene expression
Q41451057Potent transcriptional interference by pausing of RNA polymerases over a downstream promoter
Q34112935Prion propagation can occur in a prokaryote and requires the ClpB chaperone
Q97686632Production of 1-octanol in Escherichia coli by a high flux thioesterase route
Q37582354Production of shikimic acid from Escherichia coli through chemically inducible chromosomal evolution and cofactor metabolic engineering
Q47103686Programmable DNA looping using engineered bivalent dCas9 complexes
Q91595611Programmable bacteria induce durable tumor regression and systemic antitumor immunity
Q30367608Promoter activation by CII, a potent transcriptional activator from bacteriophage 186.
Q35947400Protection against Shiga-Toxigenic Escherichia coli by Non-Genetically Modified Organism Receptor Mimic Bacterial Ghosts
Q37075579Purine utilization by Klebsiella oxytoca M5al: genes for ring-oxidizing and -opening enzymes
Q36788303Putrescine catabolism is a metabolic response to several stresses in Escherichia coli.
Q48205353Quantifying cellular capacity identifies gene expression designs with reduced burden
Q33691864Quantitative Kinetic Analyses of Shutting Off a Two-Component System
Q48733771Quantitative estimation of activity and quality for collections of functional genetic elements
Q92500899RNA polymerase pausing at a protein roadblock can enhance transcriptional interference by promoter occlusion
Q44724087Random mutagenesis identifies factors involved in formate-dependent growth of the methanogenic archaeon Methanococcus maripaludis
Q92161127Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction-modification systems
Q41831017Reciprocal Regulation of l-Arabinose and d-Xylose Metabolism in Escherichia coli
Q57094470Redefinition and Unification of the SXT/R391 Family of Integrative and Conjugative Elements
Q92459626Regulation of Iron Storage by CsrA Supports Exponential Growth of Escherichia coli
Q49316786Regulation of metabolism in Escherichia coli during growth on mixtures of the non-glucose sugars: arabinose, lactose, and xylose.
Q34312265Regulation of the Escherichia coli HipBA toxin-antitoxin system by proteolysis
Q35144337Repetitive genomic insertion of gene-sized dsDNAs by targeting the promoter region of a counter-selectable marker
Q35659811Replication and Active Partition of Integrative and Conjugative Elements (ICEs) of the SXT/R391 Family: The Line between ICEs and Conjugative Plasmids Is Getting Thinner.
Q35759476Repression of the inner membrane lipoprotein NlpA by Rns in enterotoxigenic Escherichia coli
Q51344618Repurposing site-specific recombinases for synthetic biology.
Q51622296Revisiting demand rules for gene regulation.
Q42105686RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli.
Q37191525Role of FimW, FimY, and FimZ in regulating the expression of type i fimbriae in Salmonella enterica serovar Typhimurium
Q33339832Role of global regulators and nucleotide metabolism in antibiotic tolerance in Escherichia coli
Q42072775Role of the extracytoplasmic function protein family sigma factor RpoE in metal resistance of Escherichia coli
Q35095867Role of the mar-sox-rob regulon in regulating outer membrane porin expression
Q34453150Roles for both FtsA and the FtsBLQ subcomplex in FtsN-stimulated cell constriction in Escherichia coli.
Q34555106RtsA coordinately regulates DsbA and the Salmonella pathogenicity island 1 type III secretion system
Q37719214Salmonella enterica Serovar Typhi Lipopolysaccharide O-Antigen Modification Impact on Serum Resistance and Antibody Recognition
Q28766733Salmonella enterica serovar Typhimurium periplasmic superoxide dismutase SodCI is a member of the PhoPQ regulon and is induced in macrophages
Q36326607Salmonella genomic island 1 (SGI1) reshapes the mating apparatus of IncC conjugative plasmids to promote self-propagation.
Q42688968Self-enhanced accumulation of FtsN at Division Sites and Roles for Other Proteins with a SPOR domain (DamX, DedD, and RlpA) in Escherichia coli cell constriction
Q47254650Sexual recombination and increased mutation rate expedite evolution of Escherichia coli in varied fitness landscapes
Q35943400Similarity of tetracycline resistance genes isolated from fish farm bacteria to those from clinical isolates
Q50956257Single cell super-resolution imaging of E. coli OmpR during environmental stress.
Q83232366Single cell, super-resolution imaging reveals an acid pH-dependent conformational switch in SsrB regulates SPI-2
Q33760274Site-specific chromosomal integration of large synthetic constructs
Q41518834Species-specific type II restriction-modification system of Xylella fastidiosa temecula1.
Q52653731Specific features of L-histidine production by Escherichia coli concerned with feedback control of AICAR formation and inorganic phosphate/metal transport.
Q83864142Strain engineering by genome mass transfer: efficient chromosomal trait transfer method utilizing donor genomic DNA and recipient recombineering hosts
Q42420724Strong stimulation of recombinant protein production in Escherichia coli by combining stimulatory control elements in an expression cassette
Q33585996Structure-function analysis of IntDOT.
Q27678759Structure-function analysis of the LytM domain of EnvC, an activator of cell wall remodelling at theEscherichia colidivision site
Q37065870Superoxide poisons mononuclear iron enzymes by causing mismetallation
Q90672397Synthetic control of plasmid replication enables target- and self-curing of vectors and expedites genome engineering of Pseudomonas putida
Q37379498Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism.
Q35577950TatBC-independent TatA/Tat substrate interactions contribute to transport efficiency
Q35660182Temporal hierarchy of gene expression mediated by transcription factor binding affinity and activation dynamics
Q35902017Testing constraints on rRNA bases that make nonsequence-specific contacts with the codon-anticodon complex in the ribosomal A site.
Q35654507The DnaA Protein Is Not the Limiting Factor for Initiation of Replication in Escherichia coli.
Q27653378The Escherichia coli Cell Division Protein and Model Tat Substrate SufI (FtsP) Localizes to the Septal Ring and Has a Multicopper Oxidase-Like Structure
Q33541401The Escherichia coli mqsR and ygiT genes encode a new toxin-antitoxin pair
Q34467289The Escherichia coli small protein MntS and exporter MntP optimize the intracellular concentration of manganese
Q28492915The Salmonella SPI1 type three secretion system responds to periplasmic disulfide bond status via the flagellar apparatus and the RcsCDB system
Q28485717The Vibrio cholerae fatty acid regulatory protein, FadR, represses transcription of plsB, the gene encoding the first enzyme of membrane phospholipid biosynthesis
Q37539498The Virulence Regulator Rns Activates the Expression of CS14 Pili.
Q35095921The YaaA protein of the Escherichia coli OxyR regulon lessens hydrogen peroxide toxicity by diminishing the amount of intracellular unincorporated iron
Q42020372The alternative aerobic ribonucleotide reductase of Escherichia coli, NrdEF, is a manganese-dependent enzyme that enables cell replication during periods of iron starvation
Q39093135The association of the cytoplasmic domains of interleukin 4 receptor alpha and interleukin 13 receptor alpha 2 regulates interleukin 4 signaling
Q34303329The beta-oxidation systems of Escherichia coli and Salmonella enterica are not functionally equivalent
Q92767745The emergence of the two cell fates and their associated switching for a negative auto-regulating gene
Q37516465The htx and ptx operons of Pseudomonas stutzeri WM88 are new members of the pho regulon
Q35602469The induction of two biosynthetic enzymes helps Escherichia coli sustain heme synthesis and activate catalase during hydrogen peroxide stress
Q42038686The leucine-responsive regulatory protein, Lrp, modulates microcin J25 intrinsic resistance in Escherichia coli by regulating expression of the YojI microcin exporter
Q35361457The master activator of IncA/C conjugative plasmids stimulates genomic islands and multidrug resistance dissemination
Q38061976The molecular toolbox for chromosomal heterologous multiprotein expression in Escherichia coli
Q35133896The pathogen-associated iroA gene cluster mediates bacterial evasion of lipocalin 2.
Q39332980The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein H-NS.
Q39170398The role of repressor kinetics in relief of transcriptional interference between convergent promoters
Q51623723The small membrane protein MgrB regulates PhoQ bifunctionality to control PhoP target gene expression dynamics.
Q41768353The tib adherence locus of enterotoxigenic Escherichia coli is regulated by cyclic AMP receptor protein.
Q40340387Transcriptional Repression of the VC2105 Protein by Vibrio FadR Suggests that It Is a New Auxiliary Member of the fad Regulon
Q36197524Transcriptional cross talk within the mar-sox-rob regulon in Escherichia coli is limited to the rob and marRAB operons
Q36506158Transcriptional modulation of enterotoxigenic Escherichia coli virulence genes in response to epithelial cell interactions
Q40947162Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR and Fur
Q36964489Transcriptional regulation of subclass 5b fimbriae
Q54537142Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12.
Q41546256Translational Repression of the RpoS Antiadapter IraD by CsrA Is Mediated via Translational Coupling to a Short Upstream Open Reading Frame.
Q40345877Translational repression of NhaR, a novel pathway for multi-tier regulation of biofilm circuitry by CsrA
Q36170860Twin-arginine translocase mutations that suppress folding quality control and permit export of misfolded substrate proteins
Q34864912Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL.
Q58699951Type and capacity of glucose transport influences succinate yield in two-stage cultivations
Q34111754Uropathogenic Escherichia coli flagella aid in efficient urinary tract colonization
Q39564896Use of new methods for construction of tightly regulated arabinose and rhamnose promoter fusions in studies of the Escherichia coli phosphate regulon.
Q35748055Use of transposase and ends of IS608 enables precise and scarless genome modification for modulating gene expression and metabolic engineering applications in Escherichia coli
Q35738580Using protein abundance to indicate underlying mRNA expression levels in E.coli: an SEM modelling approach
Q35192447Using superfolder green fluorescent protein for periplasmic protein localization studies
Q45861988Vector insert-targeted integrative antisense expression system for plasmid stabilization
Q56895133Visualizing evolution in real time to determine the molecular mechanisms of n-butanol tolerance in Escherichia coli
Q38751916ZapA and ZapB form an FtsZ-independent structure at midcell.
Q45957295[Cloning, expression and comparative analysis of peroxiredoxine 6 from different species]
Q44605232β-Ketoacyl-Acyl Carrier Protein Synthase III (FabH) Is Essential for Bacterial Fatty Acid Synthesis

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