Making Sense of Multifunctional Proteins: Human Immunodeficiency Virus Type 1 Accessory and Regulatory Proteins and Connections to Transcription

scientific article published on September 2017

Making Sense of Multifunctional Proteins: Human Immunodeficiency Virus Type 1 Accessory and Regulatory Proteins and Connections to Transcription is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1146/ANNUREV-VIROLOGY-101416-041654
P932PMC publication ID5750048
P698PubMed publication ID28961413

P2093author name stringAlan D Frankel
John D Gross
Tyler B Faust
Jennifer M Binning
P2860cites workHIV-1 Vpu neutralizes the antiviral factor Tetherin/BST-2 by binding it and directing its beta-TrCP2-dependent degradationQ21089617
Multilayered mechanism of CD4 downregulation by HIV-1 Vpu involving distinct ER retention and ERAD targeting stepsQ21131559
Species-specific activity of SIV Nef and HIV-1 Vpu in overcoming restriction by tetherin/BST2Q21559418
THE HIV-1 REV PROTEINQ22241975
HIV-1 Nef impairs MHC class II antigen presentation and surface expressionQ22248080
Endocytosis of major histocompatibility complex class I molecules is induced by the HIV–1 Nef proteinQ22251058
Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960Q22251093
Serine phosphorylation-independent downregulation of cell-surface CD4 by nefQ22251290
T-cell differentiation factor CBF-β regulates HIV-1 Vif-mediated evasion of host restrictionQ24300389
Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathwaysQ24302300
Premature activation of the SLX4 complex by Vpr promotes G2/M arrest and escape from innate immune sensingQ24318920
SERINC3 and SERINC5 restrict HIV-1 infectivity and are counteracted by NefQ24338889
HIV-1 Nef promotes infection by excluding SERINC5 from virion incorporationQ24338895
Structure--function relationships in HIV-1 Nef.Q24522550
Binding of the 7SK snRNA turns the HEXIM1 protein into a P-TEFb (CDK9/cyclin T) inhibitorQ24563382
HIV transcriptional activation by the accessory protein, VPR, is mediated by the p300 co-activatorQ24569559
HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexesQ24606750
c-Myc regulates transcriptional pause releaseQ24629119
Crystal structure of HIV-1 Tat complexed with human P-TEFbQ24634569
Vpu directs the degradation of the human immunodeficiency virus restriction factor BST-2/Tetherin via a {beta}TrCP-dependent mechanismQ24644811
HIV-1 accessory protein Vpu internalizes cell-surface BST-2/tetherin through transmembrane interactions leading to lysosomesQ24646984
HIV-1 Rev protein assembles on viral RNA one molecule at a timeQ24658214
The human immunodeficiency virus type 1 accessory protein Vpu induces apoptosis by suppressing the nuclear factor kappaB-dependent expression of antiapoptotic factorsQ24670601
The Vpu protein of human immunodeficiency virus type 1 forms cation-selective ion channelsQ24680307
Lentiviral Vpr usurps Cul4-DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycleQ24680705
HIV-1 Vpr function is mediated by interaction with the damage-specific DNA-binding protein DDB1Q24681112
Tat protein induces self-perpetuating permissivity for productive HIV-1 infectionQ24683211
NF-kappaB p50 promotes HIV latency through HDAC recruitment and repression of transcriptional initiationQ42128724
Structural basis for hijacking CBF-β and CUL5 E3 ligase complex by HIV-1 Vif.Q42152378
HIV type 1 viral infectivity factor and the RUNX transcription factors interact with core binding factor β on genetically distinct surfaces.Q42348425
Human immunodeficiency virus type 1 vpr protein transactivation function: mechanism and identification of domains involvedQ42464739
A novel gene of HIV-1, vpu, and its 16-kilodalton productQ42656133
CBFβ stabilizes HIV Vif to counteract APOBEC3 at the expense of RUNX1 target gene expression.Q43239447
Transcriptional regulation and function during the human cell cycleQ43515454
Identification of an ion channel activity of the Vpu transmembrane domain and its involvement in the regulation of virus release from HIV-1-infected cellsQ45765997
Tat trans-activates the human immunodeficiency virus through a nascent RNA targetQ45847022
A new HTLV-III/LAV encoded antigen detected by antibodies from AIDS patientsQ46065811
HIV F/3' orf encodes a phosphorylated GTP-binding protein resembling an oncogene productQ59048755
[The Nef protein of HIV-1 associates with rafts and primes T cells for activation]Q73461830
The human immunodeficiency virus (HIV) type 2 envelope protein is a functional complement to HIV type 1 Vpu that enhances particle release of heterologous retroviruses.Q35873115
The kappaB sites in the human immunodeficiency virus type 1 long terminal repeat enhance virus replication yet are not absolutely required for viral growthQ35888601
Endocytosis and targeting of exogenous HIV-1 Tat proteinQ35926764
NF-κB, the first quarter-century: remarkable progress and outstanding questionsQ26822516
Formation of mobile chromatin-associated nuclear foci containing HIV-1 Vpr and VPRBP is critical for the induction of G2 cell cycle arrestQ27313676
Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbetaQ27630690
The Marburg virus VP24 protein interacts with Keap1 to activate the cytoprotective antioxidant response pathwayQ27682227
AFF4 binding to Tat-P-TEFb indirectly stimulates TAR recognition of super elongation complexes at the HIV promoterQ27683845
The DDB1-DCAF1-Vpr-UNG2 crystal structure reveals how HIV-1 Vpr steers human UNG2 toward destructionQ27727807
Structure of the retinoblastoma tumour-suppressor pocket domain bound to a peptide from HPV E7Q27748910
CRM1 is an export receptor for leucine-rich nuclear export signalsQ27860453
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif proteinQ27860488
7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexesQ28116607
Tat competes with CIITA for the binding to P-TEFb and blocks the expression of MHC class II genes in HIV infectionQ28144181
DNA deamination mediates innate immunity to retroviral infectionQ28179534
Nef triggers a transcriptional program in T cells imitating single-signal T cell activation and inducing HIV virulence mediatorsQ28203103
HIV-1 Tat reprograms immature dendritic cells to express chemoattractants for activated T cells and macrophagesQ28204428
The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcriptionQ28206012
Induction of APOBEC3G Ubiquitination and Degradation by an HIV-1 Vif-Cul5-SCF ComplexQ28210666
Controlling the elongation phase of transcription with P-TEFbQ28255518
A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNAQ28263974
Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4Q28267929
A novel human WD protein, h-beta TrCp, that interacts with HIV-1 Vpu connects CD4 to the ER degradation pathway through an F-box motifQ28276184
The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNAQ28279502
Retroviral restriction by APOBEC proteinsQ28290721
Interaction of Virion Protein Vpr of Human Immunodeficiency Virus Type 1 with Cellular Transcription Factor Sp1 and trans-Activation of Viral Long Terminal RepeatQ28291807
The role of Vpr in HIV-1 pathogenesisQ28301540
Brief report: absence of intact nef sequences in a long-term survivor with nonprogressive HIV-1 infectionQ28304773
A mechanism of ubiquitin-independent proteasomal degradation of the tumor suppressors p53 and p73Q28305429
Dimerization with PEBP2beta protects RUNX1/AML1 from ubiquitin-proteasome-mediated degradationQ28348865
Activation of HIV-1 from latent infection via synergy of RUNX1 inhibitor Ro5-3335 and SAHAQ28541244
Bst-2/HM1.24 is a raft-associated apical membrane protein with an unusual topologyQ28580409
The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNAQ28652351
The E6 oncoprotein encoded by human papillomavirus types 16 and 18 promotes the degradation of p53Q29547773
Tetherin inhibits retrovirus release and is antagonized by HIV-1 VpuQ29547836
The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 VifQ29618938
HIV-1 accessory proteins--ensuring viral survival in a hostile environmentQ29619538
HIV Vpu Interferes with NF-κB Activity but Not with Interferon Regulatory Factor 3.Q36080904
Lineage-Specific Viral Hijacking of Non-canonical E3 Ubiquitin Ligase Cofactors in the Evolution of Vif Anti-APOBEC3 ActivityQ36185332
Functional Segregation of Overlapping Genes in HIV.Q36226848
Transcriptional regulation of APOBEC3 antiviral immunity through the CBF-β/RUNX axisQ36276957
HIV-1 Nef disrupts MHC-I trafficking by recruiting AP-1 to the MHC-I cytoplasmic tailQ36322591
The human immunodeficiency virus type 1 (HIV-1) Vpu protein interferes with an early step in the biosynthesis of major histocompatibility complex (MHC) class I moleculesQ36377062
Life and death decisions by the E2F transcription factorsQ36499727
HIV Tat controls RNA Polymerase II and the epigenetic landscape to transcriptionally reprogram target immune cellsQ36520900
Retinoblastoma family proteins as key targets of the small DNA virus oncoproteins.Q36579274
The BET bromodomain inhibitor JQ1 activates HIV latency through antagonizing Brd4 inhibition of Tat-transactivationQ36668708
Human immunodeficiency virus type 1 Vpu protein induces rapid degradation of CD4Q36687143
Induction of IL-17 and nonclassical T-cell activation by HIV-Tat proteinQ37104090
Activation of the DNA Damage Response Is a Conserved Function of HIV-1 and HIV-2 Vpr That Is Independent of SLX4 RecruitmentQ37253817
Analysis of human immunodeficiency virus type 1 transcriptional elongation in resting CD4+ T cells in vivoQ37348552
Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variantsQ37377094
AFF1 is a ubiquitous P-TEFb partner to enable Tat extraction of P-TEFb from 7SK snRNP and formation of SECs for HIV transactivationQ37475277
The role of Tat in the human immunodeficiency virus life cycle indicates a primary effect on transcriptional elongationQ37506941
Human immunodeficiency virus type 1 Vpr-mediated G2 arrest requires Rad17 and Hus1 and induces nuclear BRCA1 and gamma-H2AX focus formation.Q37574658
CBFβ enhances de novo protein biosynthesis of its binding partners HIV-1 Vif and RUNX1 and potentiates the Vif-induced degradation of APOBEC3G.Q37714020
Mechanisms underlying HIV-1 Vpu-mediated viral egressQ38211428
Stimulation of NF-κB activity by the HIV restriction factor BST2.Q39230459
Innate sensing of HIV-1 assembly by Tetherin induces NFκB-dependent proinflammatory responses.Q39243642
Human immunodeficiency virus type 1 Vpr induces DNA replication stress in vitro and in vivo.Q39270892
Anti-tetherin activities in Vpu-expressing primate lentivirusesQ39391944
Contribution of Vpu, Env, and Nef to CD4 down-modulation and resistance of human immunodeficiency virus type 1-infected T cells to superinfectionQ39593653
Cell cycle- and Vpr-mediated regulation of human immunodeficiency virus type 1 expression in primary and transformed T-cell linesQ39594512
HIV-1 Vpu and HIV-2 Env counteract BST-2/tetherin by sequestration in a perinuclear compartmentQ39696123
HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNPQ39703646
Antagonism to and intracellular sequestration of human tetherin by the human immunodeficiency virus type 2 envelope glycoproteinQ39801517
HIV-1 antagonism of CD317 is species specific and involves Vpu-mediated proteasomal degradation of the restriction factorQ39872885
Manipulation of P-TEFb control machinery by HIV: recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR.Q40118214
Phosphatidylinositol-(4,5)-bisphosphate enables efficient secretion of HIV-1 Tat by infected T-cellsQ40508633
Vpr-mediated incorporation of UNG2 into HIV-1 particles is required to modulate the virus mutation rate and for replication in macrophagesQ40564751
HIV-1 Vpu sequesters beta-transducin repeat-containing protein (betaTrCP) in the cytoplasm and provokes the accumulation of beta-catenin and other SCFbetaTrCP substrates.Q40625711
Activation of the ATR-mediated DNA damage response by the HIV-1 viral protein R.Q40649004
The human immunodeficiency virus type 1 Vpu protein inhibits NF-kappa B activation by interfering with beta TrCP-mediated degradation of Ikappa B.Q40816820
Cooperative interaction between HIV-1 regulatory proteins Tat and Vpr modulates transcription of the viral genomeQ40863490
HIV-1 Vpr increases viral expression by manipulation of the cell cycle: a mechanism for selection of Vpr in vivoQ41071784
HIV-1 Rev downregulates Tat expression and viral replication via modulation of NAD(P)H:quinine oxidoreductase 1 (NQO1).Q41172672
Vif proteins of human and simian immunodeficiency viruses require cellular CBFβ to degrade APOBEC3 restriction factorsQ41878273
RNA-mediated displacement of an inhibitory snRNP complex activates transcription elongationQ42027880
The interferon-induced protein BST-2 restricts HIV-1 release and is downregulated from the cell surface by the viral Vpu proteinQ29619540
Cellular uptake of the tat protein from human immunodeficiency virusQ29620627
Tetherin-driven adaptation of Vpu and Nef function and the evolution of pandemic and nonpandemic HIV-1 strains.Q30382590
Activation of the ATR pathway by human immunodeficiency virus type 1 Vpr involves its direct binding to chromatin in vivoQ33227756
DDB1 maintains genome integrity through regulation of Cdt1Q33255742
HIV-1 Vpr-mediated G2 arrest involves the DDB1-CUL4AVPRBP E3 ubiquitin ligaseQ33290831
HIV-1 Nef targets MHC-I and CD4 for degradation via a final common beta-COP-dependent pathway in T cellsQ33363091
Human immunodeficiency virus type 1 has an additional coding sequence in the central region of the genomeQ33649232
Leveraging APOBEC3 proteins to alter the HIV mutation rate and combat AIDS.Q33654949
Association of Tat with Promoters of PTEN and PP2A Subunits Is Key to Transcriptional Activation of Apoptotic Pathways in HIV-Infected CD4+ T CellsQ33700607
Functional domains within the human immunodeficiency virus type 2 envelope protein required to enhance virus productionQ33737672
Identification of three functions of the adenovirus e4orf6 protein that mediate p53 degradation by the E4orf6-E1B55K complexQ33835387
HIV-1 Nef induces proinflammatory state in macrophages through its acidic cluster domain: involvement of TNF alpha receptor associated factor 2.Q34008771
Tetherin inhibits HIV-1 release by directly tethering virions to cellsQ34019962
Lentiviral Vif degrades the APOBEC3Z3/APOBEC3H protein of its mammalian host and is capable of cross-species activityQ34045987
RNA-guided assembly of Rev-RRE nuclear export complexesQ34080345
Identification of a protein encoded by the vpu gene of HIV-1.Q34163678
Feedback regulation of human immunodeficiency virus type 1 expression by the Rev proteinQ34220747
Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infectionQ34242229
Functional role of human immunodeficiency virus type 1 vpu.Q34288200
Structural insights for HIV-1 therapeutic strategies targeting Vif.Q34433647
Nef proteins from simian immunodeficiency viruses are tetherin antagonists.Q34658653
HIV-1 Tat and host AFF4 recruit two transcription elongation factors into a bifunctional complex for coordinated activation of HIV-1 transcriptionQ34896128
RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev-Rev response element complexQ35179371
The interaction between HIV-1 Tat and human cyclin T1 requires zinc and a critical cysteine residue that is not conserved in the murine CycT1 proteinQ35211232
HIV-1 Vpr induces interferon-stimulated genes in human monocyte-derived macrophages.Q35234824
Differential regulation of NF-κB-mediated proviral and antiviral host gene expression by primate lentiviral Nef and Vpu proteinsQ35549043
Transmembrane domain determinants of CD4 Downregulation by HIV-1 Vpu.Q35665886
Downregulation of CD4 by human immunodeficiency virus type 1 Nef is dependent on clathrin and involves direct interaction of Nef with the AP2 clathrin adaptor.Q35785393
The viral infectivity factor (Vif) of HIV-1 unveiledQ35791995
Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription.Q35804608
HIV Rev Assembly on the Rev Response Element (RRE): A Structural PerspectiveQ35808679
The p6gag domain of human immunodeficiency virus type 1 is sufficient for the incorporation of Vpr into heterologous viral particlesQ35838540
Vpr-induced cell cycle arrest is conserved among primate lentiviruses.Q35859146
P433issue1
P304page(s)241-260
P577publication date2017-09-01
P1433published inAnnual Review of VirologyQ19962702
P1476titleMaking Sense of Multifunctional Proteins: Human Immunodeficiency Virus Type 1 Accessory and Regulatory Proteins and Connections to Transcription
P478volume4