Unfolded protein response transducer IRE1-mediated signaling independent of XBP1 mRNA splicing is not required for growth and development of medaka fish

scientific article published on 27 September 2017

Unfolded protein response transducer IRE1-mediated signaling independent of XBP1 mRNA splicing is not required for growth and development of medaka fish is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.7554/ELIFE.26845
P932PMC publication ID5636610
P698PubMed publication ID28952924

P50authorKazutoshi MoriQ1737577
Yasuhiro KameiQ42694753
Tokiro IshikawaQ55662450
P2093author name stringTakeshi Todo
Atsushi J Nagano
Makoto Kashima
Tomoko Ishikawa-Fujiwara
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
Coupling of stress in the ER to activation of JNK protein kinases by transmembrane protein kinase IRE1Q22011167
XBP1 links ER stress to intestinal inflammation and confers genetic risk for human inflammatory bowel diseaseQ22252318
Plasma cell differentiation requires the transcription factor XBP-1Q24291453
XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factorQ24292102
Xbp1-independent Ire1 signaling is required for photoreceptor differentiation and rhabdomere morphogenesis in DrosophilaQ37381743
Signalling pathways in the unfolded protein response: development from yeast to mammalsQ37622607
Nodal signaling activates differentiation genes during zebrafish gastrulationQ38304615
Decay of endoplasmic reticulum-localized mRNAs during the unfolded protein response.Q38311676
Endoplasmic reticulum stress-induced mRNA splicing permits synthesis of transcription factor Hac1p/Ern4p that activates the unfolded protein responseQ38614162
c-Jun N-terminal Kinase-Dependent Endoplasmic Reticulum Stress Pathway is Critically Involved in Arjunic Acid Induced Apoptosis in Non-Small Cell Lung Cancer CellsQ38801551
Japanese encephalitis virus induces apoptosis by the IRE1/JNK pathway of ER stress response in BHK-21 cellsQ38812198
Regulated IRE1-dependent decay pathway is activated during Japanese encephalitis virus-induced unfolded protein response and benefits viral replicationQ39082132
Vertebrate unfolded protein response: mammalian signaling pathways are conserved in Medaka fishQ39446321
Paraquat activates the IRE1/ASK1/JNK cascade associated with apoptosis in human neuroblastoma SH-SY5Y cellsQ39802567
IRE1alpha kinase activation modes control alternate endoribonuclease outputs to determine divergent cell fates.Q39814866
Identification and characterization of the RNA-binding protein Rbfox3 in zebrafish embryoQ39940701
The requirement of IRE1 and XBP1 in resolving physiological stress during Drosophila developmentQ42363448
Endoplasmic reticulum stress contributes to CRH-induced hippocampal neuron apoptosisQ43705210
Differential tissue-specific distribution of transcripts for the duplicated fatty acid-binding protein 10 (fabp10) genes in embryos, larvae and adult zebrafish (Danio rerio).Q44301111
Expression of cardiac myosin light chain 2 during embryonic heart development in medaka fish, Oryzias latipes, and phylogenetic relationship with other myosin light chainsQ45400801
Comparative evolutionary genomics of medaka and three-spined stickleback fabp2a and fabp2b genes with fabp2 of zebrafishQ45719258
Translational attenuation mediated by an mRNA intronQ46210134
Cartilage-specific ablation of XBP1 signaling in mouse results in a chondrodysplasia characterized by reduced chondrocyte proliferation and delayed cartilage maturation and mineralizationQ46282201
Regulated IRE1-dependent mRNA decay sets the threshold for dendritic cell survival.Q47104159
ER stress and distinct outputs of the IRE1α RNase control proliferation and senescence in response to oncogenic Ras.Q47894399
Zebrafish organizer development and germ-layer formation require nodal-related signalsQ48021535
XBP1 forms a regulatory loop with BMP-4 and suppresses mesodermal and neural differentiation in Xenopus embryos.Q52034610
Transcriptional induction of mammalian ER quality control proteins is mediated by single or combined action of ATF6alpha and XBP1Q80979487
Myocyte enhancer factor 2 regulates expression of medaka Oryzias latipes fast skeletal myosin heavy chain genes in a temperature-dependent mannerQ81506881
ASK1 is essential for endoplasmic reticulum stress-induced neuronal cell death triggered by expanded polyglutamine repeatsQ24298956
pXBP1(U) encoded in XBP1 pre-mRNA negatively regulates unfolded protein response activator pXBP1(S) in mammalian ER stress responseQ24303865
IRE1-mediated unconventional mRNA splicing and S2P-mediated ATF6 cleavage merge to regulate XBP1 in signaling the unfolded protein responseQ24672592
Signal integration in the endoplasmic reticulum unfolded protein responseQ27860577
Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradationQ28131669
IRE1 couples endoplasmic reticulum load to secretory capacity by processing the XBP-1 mRNAQ28214814
Coordinated activation of the secretory pathway during notochord formation in the Xenopus embryoQ28312166
Increased sensitivity to dextran sodium sulfate colitis in IRE1beta-deficient miceQ28359871
Regulation of hepatic lipogenesis by the transcription factor XBP1Q28507784
XBP-1 is required for biogenesis of cellular secretory machinery of exocrine glandsQ28510479
An essential role in liver development for transcription factor XBP-1Q28593777
ATF6 activated by proteolysis binds in the presence of NF-Y (CBF) directly to the cis-acting element responsible for the mammalian unfolded protein responseQ28611502
Trimmomatic: a flexible trimmer for Illumina sequence dataQ29547278
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeQ29547458
Stress signaling from the lumen of the endoplasmic reticulum: coordination of gene transcriptional and translational controlsQ29547730
TCC: an R package for comparing tag count data with robust normalization strategiesQ30654220
Isolation of cDNAs for LCE and HCE, two constituent proteases of the hatching enzyme of Oryzias latipes, and concurrent expression of their mRNAs during developmentQ30993050
Generation of medaka gene knockout models by target-selected mutagenesisQ33265948
Time-dependent patterning of the mesoderm and endoderm by Nodal signals in zebrafishQ33280298
The role of IRE1alpha in the degradation of insulin mRNA in pancreatic beta-cellsQ33320542
High-resolution melting curve analysis for rapid detection of mutations in a Medaka TILLING libraryQ33692500
Tripartite management of unfolded proteins in the endoplasmic reticulumQ33941135
Activation of JNK and transcriptional repressor ATF3/LRF1 through the IRE1/TRAF2 pathway is implicated in human vascular endothelial cell death by homocysteineQ34103511
Nodal Signaling in Vertebrate DevelopmentQ34271462
Dual regulation of cadmium-induced apoptosis by mTORC1 through selective induction of IRE1 branches in unfolded protein responseQ34734145
Dual and opposing roles of the unfolded protein response regulated by IRE1alpha and XBP1 in proinsulin processing and insulin secretionQ35008217
Detection of plant viruses in natural environments by using RNA-SeqQ35306500
IRE1α activation protects mice against acetaminophen-induced hepatotoxicityQ35760821
Silencing of lipid metabolism genes through IRE1α-mediated mRNA decay lowers plasma lipids in mice.Q36330343
XBP-1u suppresses autophagy by promoting the degradation of FoxO1 in cancer cellsQ36739979
ATF6α/β-mediated adjustment of ER chaperone levels is essential for development of the notochord in medaka fishQ36803184
RETRACTED: The unfolded protein response element IRE1α senses bacterial proteins invading the ER to activate RIG-I and innate immune signalingQ37154230
Regulated Ire1-dependent decay of messenger RNAs in mammalian cellsQ37309146
Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity.Q37349204
P4510describes a project that usesedgeRQ113334690
P407language of work or nameEnglishQ1860
P577publication date2017-09-27
P1433published ineLifeQ2000008
P1476titleUnfolded protein response transducer IRE1-mediated signaling independent of XBP1 mRNA splicing is not required for growth and development of medaka fish
P478volume6

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cites work (P2860)
Q59360160A Collection of Transgenic Medaka Strains for Efficient Site-Directed Transgenesis Mediated by phiC31 Integrase
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Q57243233Endoplasmic reticulum stress signalling - from basic mechanisms to clinical applications
Q93140252High-yielding rice Takanari has superior photosynthetic response to a commercial rice Koshihikari under fluctuating light
Q55283549IRE1α Implications in Endoplasmic Reticulum Stress-Mediated Development and Pathogenesis of Autoimmune Diseases.
Q64062913Lasy-Seq: a high-throughput library preparation method for RNA-Seq and its application in the analysis of plant responses to fluctuating temperatures
Q58105954Life of proteins: from nascent chain to degradation
Q91633568The unfolded protein response in metazoan development
Q90401715Transcriptional Variation in Glucosinolate Biosynthetic Genes and Inducible Responses to Aphid Herbivory on Field-Grown Arabidopsis thaliana

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