Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin

scientific article

Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1006/JMBI.1997.1044
P3181OpenCitations bibliographic resource ID1878428
P698PubMed publication ID9199409
P5875ResearchGate publication ID222491851

P50authorHartmut OschkinatQ28321908
Michael NilgesQ32417845
Maria J MaciasQ37643992
Sean O'DonoghueQ67588991
P2093author name stringS I O'Donoghue
M J Macias
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectautomationQ184199
solution structureQ99235426
P304page(s)408-422
P577publication date1997-06-01
P1433published inJournal of Molecular BiologyQ925779
P1476titleAutomated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin
P478volume269

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cites work (P2860)
Q303335001H(C) and 1H(N) total NOE correlations in a single 3D NMR experiment. 15N and 13C time-sharing in t1 and t2 dimensions for simultaneous data acquisition.
Q303282423D H(aro)-NOESY-CH3NH and C(aro)-NOESY-CH3NH experiments for double labeled proteins.
Q33397360A HAUSDORFF-BASED NOE ASSIGNMENT ALGORITHM USING PROTEIN BACKBONE DETERMINED FROM RESIDUAL DIPOLAR COUPLINGS AND ROTAMER PATTERNS
Q27670475A Smad action turnover switch operated by WW domain readers of a phosphoserine code
Q28510972A classic zinc finger from friend of GATA mediates an interaction with the coiled-coil of transforming acidic coiled-coil 3
Q36420327A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers
Q27658822A conformational switch in the scaffolding protein NHERF1 controls autoinhibition and complex formation
Q27666507A kinked antimicrobial peptide from Bombina maxima. I. Three-dimensional structure determined by NMR in membrane-mimicking environments
Q36541551A novel conotoxin, qc16a, with a unique cysteine framework and folding
Q44524289A novel method for the biosynthesis of deuterated proteins with selective protonation at the aromatic rings of Phe, Tyr and Trp.
Q27322813A pain-inducing centipede toxin targets the heat activation machinery of nociceptor TRPV1.
Q44258185A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics
Q57077648Ambiguous NOEs and automated NOE assignment
Q36878828Ambiguous distance data in the calculation of NMR structures
Q46403902An Optically Active Polymer for Broad-Spectrum Enantiomeric Recognition of Chiral Acids.
Q30357187An automated assignment-free Bayesian approach for accurately identifying proton contacts from NOESY data.
Q27619522An immunoglobulin-like fold in a major plant allergen: the solution structure of Phl p 2 from timothy grass pollen
Q30327432An integrated approach to structural genomics.
Q30350474An integrated platform for automated analysis of protein NMR structures.
Q27641924Anastellin, an FN3 fragment with fibronectin polymerization activity, resembles amyloid fibril precursors
Q33491549Anopheles gambiae PGRPLC-mediated defense against bacteria modulates infections with malaria parasites
Q30327863Ansig for Windows: an interactive computer program for semiautomatic assignment of protein NMR spectra.
Q52132327Application of automated NOE assignment to three-dimensional structure refinement of a 28 kDa single-chain T cell receptor.
Q22253357Autoinhibition and activation mechanisms of the Wiskott-Aldrich syndrome protein
Q30385726Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints.
Q74128247Automated NMR determination of protein backbone dihedral angles from cross-correlated spin relaxation
Q33745471Automated analysis of NMR assignments and structures for proteins.
Q78049006Automated assignment and 3D structure calculations using combinations of 2D homonuclear and 3D heteronuclear NOESY spectra
Q28289172Automated error-tolerant macromolecular structure determination from multidimensional nuclear Overhauser enhancement spectra and chemical shift assignments: improved robustness and performance of the PASD algorithm
Q51958783Automated protein NMR structure determination using wavelet de-noised NOESY spectra.
Q36572011Automated protein fold determination using a minimal NMR constraint strategy
Q82022661Automated structure determination from NMR spectra
Q51085267Automatic NOESY assignment in CS-RASREC-Rosetta.
Q33368675Automatic assignment of protein backbone resonances by direct spectrum inspection in targeted acquisition of NMR data
Q47247452BACUS: A Bayesian protocol for the identification of protein NOESY spectra via unassigned spin systems
Q57204634Bestimmung von Strukturinformation aus experimentellen Messdaten für Biomoleküle
Q90858877Binding site plasticity in viral PPxY Late domain recognition by the third WW domain of human NEDD4
Q28144948Biological function made crystal clear - annotation of hypothetical proteins via structural genomics
Q45294564Biophysical Aspect of Huntingtin Protein During polyQ: An In Silico Insight
Q52897244Biophysical aspect of phosphatidylinositol 3-kinase and role of oncogenic mutants (E542K & E545K).
Q27641173CCHX zinc finger derivatives retain the ability to bind Zn(II) and mediate protein-DNA interactions
Q57970611Chapter 3 Applications of the NOE in Molecular Biology
Q57014282Characterization of biopharmaceuticals by NMR spectroscopy
Q34313189Characterizing protein-protein complexes and oligomers by nuclear magnetic resonance spectroscopy
Q47244406Chemical inhibition of N-WASP by stabilization of a native autoinhibited conformation
Q30372955Combined automated NOE assignment and structure calculation with CYANA.
Q39466789Computational investigation of cancer-associated molecular mechanism in Aurora A (S155R) mutation
Q45290023Computational investigation of molecular mechanism and neuropathological implications in Huntington disease
Q31143273Deriving Structural Information from Experimentally Measured Data on Biomolecules.
Q27630811Designed protein G core variants fold to native-like structures: Sequence selection by ORBIT tolerates variation in backbone specification
Q58061988Determination of the Conformation of the 2′OH Group in RNA by NMR Spectroscopy and DFT Calculations
Q30371771Direct methods and residue type specific isotope labeling in NMR structure determination and model-driven sequential assignment.
Q30426059Disease-causing mutation in extracellular and intracellular domain of FGFR1 protein: computational approach
Q61821271Dynamic ion pair behavior stabilizes single alpha helices in proteins
Q39094614Dystrophin and Spectrin, Two Highly Dissimilar Sisters of the Same Family
Q52920397Efficient sampling in collective coordinate space.
Q27641617Engineering a protein scaffold from a PHD finger
Q27646860Eukaryotic class 1 translation termination factor eRF1--the NMR structure and dynamics of the middle domain involved in triggering ribosome-dependent peptidyl-tRNA hydrolysis
Q30559807Exploring protein interiors: the role of a buried histidine in the KH module fold
Q47959700F-actin-binding proteins
Q30369353Flipping in the pore: discovery of dual inhibitors that bind in different orientations to the wild-type versus the amantadine-resistant S31N mutant of the influenza A virus M2 proton channel.
Q47618755Fluctuations in ion pairs and their stabilities in proteins
Q24655445GeNMR: a web server for rapid NMR-based protein structure determination
Q30982097Generation of native-like protein structures from limited NMR data, modern force fields and advanced conformational sampling
Q37090944Guiding automated NMR structure determination using a global optimization metric, the NMR DP score
Q46645340High-resolution solid-state NMR studies on uniformly [13C,15N]-labeled ubiquitin
Q27639493High-resolution structure of the pleckstrin homology domain of protein kinase b/akt bound to phosphatidylinositol (3,4,5)-trisphosphate
Q30328636High-throughput three-dimensional protein structure determination.
Q27650961Implementing the LIM code: the structural basis for cell type-specific assembly of LIM-homeodomain complexes
Q78049010Improving the quality of protein structures derived by NMR spectroscopy
Q30350120Influence of chemical shift tolerances on NMR structure calculations using ARIA protocols for assigning NOE data.
Q30336300Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment.
Q27619799Inherent flexibility in a potent inhibitor of blood coagulation, recombinant nematode anticoagulant protein c2
Q45282995Investigation of binding phenomenon of NSP3 and p130Cas mutants and their effect on cell signalling
Q41748115Isoform-specific differences between the type Ialpha and IIalpha cyclic AMP-dependent protein kinase anchoring domains revealed by solution NMR.
Q27677356Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1
Q27639896Lock and key binding of the HOX YPWM peptide to the PBX homeodomain
Q30352079MOTOR: model assisted software for NMR structure determination.
Q29994509Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists
Q44971469Molecular docking and molecular dynamics study on the effect of ERCC1 deleterious polymorphisms in ERCC1-XPF heterodimer
Q30372362NMR data-driven structure determination using NMR-I-TASSER in the CASD-NMR experiment.
Q24602572NMR solution structure and function of the C-terminal domain of eukaryotic class 1 polypeptide chain release factor
Q27626381NMR structure and mutagenesis of the third Bir domain of the inhibitor of apoptosis protein XIAP
Q36519177NMR structure of CXCR3 binding chemokine CXCL11 (ITAC).
Q27654207NMR structure of a fungal virulence factor reveals structural homology with mammalian saposin B
Q27640356NMR structure of a variant human prion protein with two disulfide bridges
Q27636085NMR structure of the Euplotes raikovi pheromone Er-23 and identification of its five disulfide bonds
Q27630622NMR structure of the calreticulin P-domain
Q36476566NMR structure of the conserved hypothetical protein TM0487 from Thermotoga maritima: implications for 216 homologous DUF59 proteins
Q27639915NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH
Q27636458NMR structure reveals intramolecular regulation mechanism for pheromone binding and release
Q73922447NMR studies of the sporulation protein SpoIIAA: implications for the regulation of the transcription factor sigmaF in Bacillus subtilis
Q30159844New approaches to high-throughput structure characterization of SH3 complexes: the example of Myosin-3 and Myosin-5 SH3 domains from S. cerevisiae
Q35835917Novel structures of self-associating stapled peptides
Q58007572Nuclear Magnetic Resonance Methods for Studying Soluble, Fibrous, and Membrane-Embedded Proteins
Q28473057Odorranalectin is a small peptide lectin with potential for drug delivery and targeting
Q30360124Outliers in SAR and QSAR: is unusual binding mode a possible source of outliers?
Q30401790Overview on the use of NMR to examine protein structure
Q27860611Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
Q30330309Protein structure elucidation from NMR proton densities.
Q30350477Protein structure elucidation from minimal NMR data: the CLOUDS approach.
Q52075973RFAC, a program for automated NMR R-factor estimation.
Q27655963Ranaspumin-2: Structure and Function of a Surfactant Protein from the Foam Nests of a Tropical Frog
Q27626699Rapid fold and structure determination of the archaeal translation elongation factor 1beta from Methanobacterium thermoautotrophicum
Q30427755Recent advances in computational methods for nuclear magnetic resonance data processing
Q27641683Related protein-protein interaction modules present drastically different surface topographies despite a conserved helical platform
Q34178725Relationship between ion pair geometries and electrostatic strengths in proteins
Q27639870Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold
Q45926282Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta.
Q27620955Rotamer strain as a determinant of protein structural specificity
Q57078228SANE (Structure Assisted NOE Evaluation): an automated model-based approach for NOE assignment
Q40689171Self-assembly of MPG1, a hydrophobin protein from the rice blast fungus that forms functional amyloid coatings, occurs by a surface-driven mechanism
Q27644746Solution Conformation of the His-47 to Ala-47 Mutant of Pseudomonas stutzeri ZoBell Ferrocytochrome c-551
Q27650342Solution Structure of a Hydrocarbon Stapled Peptide Inhibitor in Complex with Monomeric C-terminal Domain of HIV-1 Capsid
Q27675926Solution Structure of an Archaeal DNA Binding Protein with an Eukaryotic Zinc Finger Fold
Q24300314Solution Structure of the C-terminal Domain of the Ciliary Neurotrophic Factor (CNTF) Receptor and Ligand Free Associations among Components of the CNTF Receptor Complex
Q41913492Solution conformation of alpha-conotoxin GIC, a novel potent antagonist of alpha3beta2 nicotinic acetylcholine receptors
Q27619529Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin
Q27638931Solution structure and dynamics of melanoma inhibitory activity protein
Q24292283Solution structure and dynamics of the lipoic acid-bearing domain of human mitochondrial branched-chain alpha-keto acid dehydrogenase complex
Q41865670Solution structure of HndAc: a thioredoxin-like domain involved in the NADP-reducing hydrogenase complex
Q27641880Solution structure of Pi4, a short four-disulfide-bridged scorpion toxin specific of potassium channels
Q30573700Solution structure of Syrian hamster prion protein rPrP(90-231).
Q27645705Solution structure of YaeO, a Rho-specific inhibitor of transcription termination
Q44895863Solution structure of atypical protein kinase C PB1 domain and its mode of interaction with ZIP/p62 and MEK5.
Q38307453Solution structure of family 21 carbohydrate-binding module from Rhizopus oryzae glucoamylase
Q27640331Solution structure of paralytic peptide of silkworm, Bombyx mori
Q27640519Solution structure of termicin, an antimicrobial peptide from the termite Pseudacanthotermes spiniger
Q27641883Solution structure of the C-terminal domain from poly(A)-binding protein inTrypanosoma cruzi: A vegetal PABC domain
Q27746093Solution structure of the DNA-binding domain and model for the complex of multifunctional hexameric arginine repressor with DNA
Q27626645Solution structure of the E200K variant of human prion protein. Implications for the mechanism of pathogenesis in familial prion diseases
Q27638848Solution structure of the LicT-RNA antitermination complex: CAT clamping RAT.
Q27661302Solution structure of the N-terminal domain of DC-UbP/UBTD2 and its interaction with ubiquitin
Q24300821Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta2-beta3 loop to PDZ domain-ligand interactions
Q24290873Solution structure of the PHD domain from the KAP-1 corepressor: structural determinants for PHD, RING and LIM zinc-binding domains
Q27622724Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum
Q27653624Solution structure of the bb' domains of human protein disulfide isomerase
Q27637734Solution structure of the calponin CH domain and fitting to the 3D-helical reconstruction of F-actin:calponin
Q33788402Solution structure of the carbon storage regulator protein CsrA from Escherichia coli
Q27644705Solution structure of the catalytic domain of RICH protein from goldfish
Q27640204Solution structure of the coiled-coil trimerization domain from lung surfactant protein D
Q27638813Solution structure of the orphan PABC domain from Saccharomyces cerevisiae poly(A)-binding protein
Q41768339Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin
Q42190705Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells
Q30909300Solution structures of cyclic melanocortin agonists and antagonists by NMR.
Q34579372Structural NMR of protein oligomers using hybrid methods
Q36755078Structural Studies of the Nedd4 WW Domains and Their Selectivity for the Connexin43 (Cx43) Carboxyl Terminus
Q33719392Structural Transformation of the Tandem Ubiquitin-Interacting Motifs in Ataxin-3 and Their Cooperative Interactions with Ubiquitin Chains
Q27620963Structural and functional consequences of the presence of a fourth disulfide bridge in the scorpion short toxins: Solution structure of the potassium channel inhibitor HsTX1
Q27629143Structural basis for binding of Smac/DIABLO to the XIAP BIR3 domain
Q27627224Structural basis for relief of autoinhibition of the Dbl homology domain of proto-oncogene Vav by tyrosine phosphorylation
Q30159876Structural basis for rodlet assembly in fungal hydrophobins
Q24523702Structural basis for the interaction of Asf1 with histone H3 and its functional implications
Q24676096Structural basis for the recognition of ldb1 by the N-terminal LIM domains of LMO2 and LMO4
Q24628923Structural basis for the versatile interactions of Smad7 with regulator WW domains in TGF-β Pathways
Q24302239Structural basis of ligand recognition by PABC, a highly specific peptide-binding domain found in poly(A)-binding protein and a HECT ubiquitin ligase
Q34226460Structural evidence that brain cyclic nucleotide phosphodiesterase is a member of the 2H phosphodiesterase superfamily
Q27642885Structural insights into molecular function of the metastasis-associated phosphatase PRL-3
Q24336008Structural insights into the specific binding of huntingtin proline-rich region with the SH3 and WW domains
Q30371763Structural proteomics by NMR spectroscopy.
Q42256579Structure and Function of p53-DNA Complexes with Inactivation and Rescue Mutations: A Molecular Dynamics Simulation Study
Q27766337Structure and mutagenesis of the Dbl homology domain
Q27639607Structure and orientation of a G protein fragment in the receptor bound state from residual dipolar couplings
Q27625128Structure and self-association of the Rous sarcoma virus capsid protein
Q22009957Structure of Cdc42 in complex with the GTPase-binding domain of the 'Wiskott-Aldrich syndrome' protein
Q27766331Structure of a Numb PTB domain-peptide complex suggests a basis for diverse binding specificity
Q27622544Structure of a conserved domain common to the transcription factors TFIIS, elongin A, and CRSP70
Q24311589Structure of a regulatory complex involving the Abl SH3 domain, the Crk SH2 domain, and a Crk-derived phosphopeptide
Q27638862Structure of the C3b binding site of CR1 (CD35), the immune adherence receptor
Q27643172Structure of the archaeal translation initiation factor aIF2 from Methanobacterium thermoautotrophicum: Implications for translation initiation
Q27746702Structure of the cyclin-dependent kinase inhibitor p19Ink4d
Q22009973Structure of the small G protein Cdc42 bound to the GTPase-binding domain of ACK
Q27656008Structure, Function, and Targets of the Transcriptional Regulator SvtR from the Hyperthermophilic Archaeal Virus SIRV1
Q41004311Structure-based minimization of transforming growth factor-alpha (TGF-alpha) through NMR analysis of the receptor-bound ligand. Design, solution structure, and activity of TGF-alpha 8-50.
Q27021967Synergistic applications of MD and NMR for the study of biological systems
Q30372900Systematic evaluation of combined automated NOE assignment and structure calculation with CYANA.
Q44934836TFIIH contains a PH domain involved in DNA nucleotide excision repair
Q27640972The DCX-domain tandems of doublecortin and doublecortin-like kinase
Q27640522The H-NS dimerization domain defines a new fold contributing to DNA recognition
Q30482655The NMR structure of a stable and compact all-beta-sheet variant of intestinal fatty acid-binding protein
Q27638271The NMR structure of the class I human ubiquitin-conjugating enzyme 2b
Q27642560The Octapeptide Repeats in Mammalian Prion Protein Constitute a pH-dependent Folding and Aggregation Site
Q27642246The PB1 domain and the PC motif-containing region are structurally similar protein binding modules
Q28548168The Physiological Molecular Shape of Spectrin: A Compact Supercoil Resembling a Chinese Finger Trap
Q27641596The Solution Structure of YbcJ from Escherichia coli Reveals a Recently Discovered L Motif Involved in RNA Binding
Q27860805The Xplor-NIH NMR molecular structure determination package
Q34594861The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
Q37372206The first gene-encoded amphibian neurotoxin
Q48018951The precision of NMR structure ensembles revisited
Q27635775The solution structure and intramolecular associations of the Tec kinase SRC homology 3 domain
Q24803499The solution structure of ChaB, a putative membrane ion antiporter regulator from Escherichia coli
Q35110861The solution structure of REF2-I reveals interdomain interactions and regions involved in binding mRNA export factors and RNA.
Q52937984The solution structure of an N-terminally truncated version of the yeast CDC24p PB1 domain shows a different beta-sheet topology.
Q27639251The solution structure of the bacteriophage lambda head-tail joining protein, gpFII
Q27743918The solution structure of the first KH domain of FMR1, the protein responsible for the fragile X syndrome
Q27618778The structure in solution of the b domain of protein disulfide isomerase
Q42112129The structure of Leishmania mexicana ICP provides evidence for convergent evolution of cysteine peptidase inhibitors
Q24630729The structure of mouse HP1 suggests a unique mode of single peptide recognition by the shadow chromo domain dimer
Q27640803The structure of the zinc finger domain from human splicing factor ZNF265 fold
Q27765715The three-dimensional structure of a type I module from titin: a prototype of intracellular fibronectin type III domains
Q52024703Three-way decomposition of a complete 3D 15N-NOESY-HSQC.
Q27625459Towards a structural understanding of Friedreich's ataxia: the solution structure of frataxin
Q35584937Toxin acidic residue evolutionary function-guided design of de novo peptide drugs for the immunotherapeutic target, the Kv1.3 channel
Q40197173Two WXXF-based motifs in NECAPs define the specificity of accessory protein binding to AP-1 and AP-2.
Q27663561Unique Structural Characteristics of the Rabbit Prion Protein
Q27621796Unraveling the symmetry ambiguity in a hexamer: calculation of the R6 human insulin structure
Q35144962Use of long term molecular dynamics simulation in predicting cancer associated SNPs
Q47624675Validation of protein models derived from experiment
Q73609296Variability in automated assignment of NOESY spectra and three-dimensional structure determination: a test case on three small disulfide-bonded proteins
Q46735392VirtualSpectrum, a tool for simulating peak list for multi-dimensional NMR spectra
Q34478512Weighting of experimental evidence in macromolecular structure determination
Q24557467Zinc fingers as protein recognition motifs: structural basis for the GATA-1/friend of GATA interaction
Q27622727Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum

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