scholarly article | Q13442814 |
P50 | author | Ali Shilatifard | Q15989733 |
Shelley L. Berger | Q51827958 | ||
Lorraine Pillus | Q87698814 | ||
P2093 | author name string | Anastasia Wyce | |
Cheng-Fu Kao | |||
Karl W Henry | |||
Laura J Duggan | |||
Mary Ann Osley | |||
N C Tolga Emre | |||
Wan-Sheng Lo | |||
P2860 | cites work | Functional organization of the yeast proteome by systematic analysis of protein complexes | Q24292209 |
The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs | Q24554357 | ||
Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde | Q27640257 | ||
The language of covalent histone modifications | Q27860931 | ||
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae | Q27861085 | ||
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry | Q27861116 | ||
Histone H3 specific acetyltransferases are essential for cell cycle progression | Q27929940 | ||
The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAF(II)30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex | Q27930726 | ||
Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction. | Q27930736 | ||
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation | Q27930884 | ||
The ADA complex is a distinct histone acetyltransferase complex in Saccharomyces cerevisiae | Q27931014 | ||
Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry | Q27931371 | ||
ADR1 activation domains contact the histone acetyltransferase GCN5 and the core transcriptional factor TFIIB. | Q27931384 | ||
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases | Q27931861 | ||
Analysis of the deubiquitinating enzymes of the yeast Saccharomyces cerevisiae | Q27932938 | ||
The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation | Q27933486 | ||
Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter | Q27933859 | ||
A conserved RING finger protein required for histone H2B monoubiquitination and cell size control. | Q27934010 | ||
The novel SLIK histone acetyltransferase complex functions in the yeast retrograde response pathway. | Q27934606 | ||
Analysis of Spt7 function in the Saccharomyces cerevisiae SAGA coactivator complex. | Q27934769 | ||
Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex | Q27934812 | ||
SALSA, a variant of yeast SAGA, contains truncated Spt7, which correlates with activated transcription | Q27936016 | ||
A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation | Q27936635 | ||
The ATM-related cofactor Tra1 is a component of the purified SAGA complex | Q27937594 | ||
Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters | Q27938704 | ||
The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B. | Q27939794 | ||
The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p | Q27940017 | ||
The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. | Q27940298 | ||
The tandem affinity purification (TAP) method: a general procedure of protein complex purification | Q28131621 | ||
Dissecting the regulatory circuitry of a eukaryotic genome | Q28131632 | ||
Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae | Q28343956 | ||
SAGA is an essential in vivo target of the yeast acidic activator Gal4p | Q28345347 | ||
Active genes are tri-methylated at K4 of histone H3 | Q29547668 | ||
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity | Q29555842 | ||
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II | Q29614679 | ||
Methylation of histone H3 Lys 4 in coding regions of active genes | Q29614680 | ||
Dot1p modulates silencing in yeast by methylation of the nucleosome core | Q29614855 | ||
Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast | Q29617217 | ||
Rad6-dependent ubiquitination of histone H2B in yeast | Q29617525 | ||
Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries | Q29622865 | ||
Gene silencing: trans-histone regulatory pathway in chromatin | Q30309681 | ||
Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14. | Q33911284 | ||
Emerging roles of ubiquitin in transcription regulation | Q34129014 | ||
Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6. | Q34133875 | ||
Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation | Q34154556 | ||
The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. | Q34168365 | ||
HDAC's at work: everyone doing their part | Q34671229 | ||
Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation | Q34762156 | ||
Transcriptional control of nonfermentative metabolism in the yeast Saccharomyces cerevisiae | Q35114839 | ||
The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo | Q35209265 | ||
Reversible histone modification and the chromosome cell cycle | Q35225904 | ||
Paf1p, an RNA polymerase II-associated factor in Saccharomyces cerevisiae, may have both positive and negative roles in transcription | Q36557179 | ||
The E2 ubiquitin conjugase Rad6 is required for the ArgR/Mcm1 repression of ARG1 transcription | Q39406784 | ||
Histone folds mediate selective heterodimerization of yeast TAF(II)25 with TFIID components yTAF(II)47 and yTAF(II)65 and with SAGA component ySPT7. | Q39458102 | ||
Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast | Q39895202 | ||
Role for ADA/GCN5 products in antagonizing chromatin-mediated transcriptional repression | Q40023668 | ||
Ubiquitinated histone H2B is preferentially located in transcriptionally active chromatin | Q41307223 | ||
RAD6 gene product of Saccharomyces cerevisiae requires a putative ubiquitin protein ligase (E3) for the ubiquitination of certain proteins. | Q42118407 | ||
Regulation of transcriptional activation domain function by ubiquitin | Q43682027 | ||
Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus | Q43703042 | ||
Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism | Q43871051 | ||
Level of ubiquitinated histone H2B in chromatin is coupled to ongoing transcription | Q44511165 | ||
The RAD6 protein of Saccharomyces cerevisiae polyubiquitinates histones, and its acidic domain mediates this activity | Q44992776 | ||
Requirement of Hos2 histone deacetylase for gene activity in yeast | Q46070318 | ||
Transcriptional activation by yeast PDR1p is inhibited by its association with NGG1p/ADA3p | Q48062271 | ||
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. | Q51599592 | ||
Nucleosomes unfold completely at a transcriptionally active promoter. | Q51599596 | ||
TOM1p, a yeast hect-domain protein which mediates transcriptional regulation through the ADA/SAGA coactivator complexes. | Q52532015 | ||
P433 | issue | 21 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | Ubiquitin-specific protease UBP8 YMR223W | Q27547304 |
ubiquitination | Q33059483 | ||
P304 | page(s) | 2648-63 | |
P577 | publication date | 2003-11-01 | |
P1433 | published in | Genes & Development | Q1524533 |
P1476 | title | Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. | |
P478 | volume | 17 |
Q28081868 | (Ubi)quitin' the h2bit: recent insights into the roles of H2B ubiquitylation in DNA replication and transcription |
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Q27670664 | A Role for Intersubunit Interactions in Maintaining SAGA Deubiquitinating Module Structure and Activity |
Q24307408 | A TFTC/STAGA module mediates histone H2A and H2B deubiquitination, coactivates nuclear receptors, and counteracts heterochromatin silencing |
Q38551630 | A brief histone in time: understanding the combinatorial functions of histone PTMs in the nucleosome context |
Q34313810 | A deubiquitylating complex required for neosynthesis of a yeast mitochondrial ATP synthase subunit |
Q36723292 | A genetic and molecular toolbox for analyzing histone ubiquitylation and sumoylation in yeast. |
Q33691600 | A global census of fission yeast deubiquitinating enzyme localization and interaction networks reveals distinct compartmentalization profiles and overlapping functions in endocytosis and polarity |
Q24314096 | A high-confidence interaction map identifies SIRT1 as a mediator of acetylation of USP22 and the SAGA coactivator complex |
Q24337802 | A histone H2A deubiquitinase complex coordinating histone acetylation and H1 dissociation in transcriptional regulation |
Q80837134 | A mechanism related to the yeast transcriptional regulator Paf1c is required for expression of the Arabidopsis FLC/MAF MADS box gene family |
Q37829707 | A modified epigenetics toolbox to study histone modifications on the nucleosome core. |
Q37947760 | A new chapter in the transcription SAGA. |
Q30448402 | A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation |
Q33565860 | A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression |
Q27939024 | A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA. |
Q27934274 | A role for H2B ubiquitylation in DNA replication |
Q62019752 | A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export |
Q36451302 | A targeted in vivo RNAi screen reveals deubiquitinases as new regulators of Notch signaling. |
Q37994551 | ATAC-king the complexity of SAGA during evolution |
Q42772802 | ATXN7L3 and ENY2 Coordinate Activity of Multiple H2B Deubiquitinases Important for Cellular Proliferation and Tumor Growth. |
Q34165906 | Aberrant expression of USP22 is associated with liver metastasis and poor prognosis of colorectal cancer |
Q50893480 | Activation of gene expression by histone deubiquitinase OTLD1. |
Q58375318 | Active site alanine mutations convert deubiquitinases into high-affinity ubiquitin-binding proteins |
Q36065229 | Aggregation of Polyglutamine-expanded Ataxin 7 Protein Specifically Sequesters Ubiquitin-specific Protease 22 and Deteriorates Its Deubiquitinating Function in the Spt-Ada-Gcn5-Acetyltransferase (SAGA) Complex |
Q37246670 | Alterations of histone modifications by cobalt compounds |
Q37352446 | Altered histone monoubiquitylation mediated by mutant huntingtin induces transcriptional dysregulation |
Q64063488 | Architecture of SAGA complex |
Q36289979 | Ascending the nucleosome face: recognition and function of structured domains in the histone H2A-H2B dimer |
Q83230336 | Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization |
Q46722207 | Atg19p ubiquitination and the cytoplasm to vacuole trafficking pathway in yeast |
Q57246269 | BAP1 links metabolic regulation of ferroptosis to tumour suppression |
Q38122765 | Balancing chromatin remodeling and histone modifications in transcription |
Q36752292 | Biology of polycomb and trithorax group proteins |
Q89531833 | Bridging non-overlapping reads illuminates high-order epistasis between distal protein sites in a GPCR |
Q44778228 | C-terminus of the Sgf73 subunit of SAGA and SLIK is important for retention in the larger complex and for heterochromatin boundary function. |
Q96136649 | CRISPR screen in regulatory T cells reveals modulators of Foxp3 |
Q24318345 | Calcium/calmodulin regulates ubiquitination of the ubiquitin-specific protease TRE17/USP6 |
Q44683549 | Carbohydrates induce mono-ubiquitination of H2B in yeast |
Q24654957 | Catalysis and substrate selection by histone/protein lysine acetyltransferases |
Q33984490 | Catalysis-dependent stabilization of Bre1 fine-tunes histone H2B ubiquitylation to regulate gene transcription |
Q48331605 | Centromeric histone H2B monoubiquitination promotes noncoding transcription and chromatin integrity |
Q36416226 | Characterization of new Spt3 and TATA-binding protein mutants of Saccharomyces cerevisiae: Spt3 TBP allele-specific interactions and bypass of Spt8. |
Q27937996 | Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation |
Q37093722 | Chemical Synthesis of Phosphorylated Histone H2A at Tyr57 Reveals Insight into the Inhibition Mode of the SAGA Deubiquitinating Module. |
Q40343286 | Chemical answers to epigenetic crosstalk. |
Q46177112 | Chemo-Genetic Interactions Between Histone Modification and the Antiproliferation Drug AICAR Are Conserved in Yeast and Humans |
Q38987852 | Choose Your Own Adventure: The Role of Histone Modifications in Yeast Cell Fate |
Q22065678 | Chromatin dynamics at DNA replication, transcription and repair |
Q37961878 | Chromatin response to DNA double-strand break damage |
Q33285644 | Chromatin signaling to kinetochores: transregulation of Dam1 methylation by histone H2B ubiquitination |
Q82282561 | Chromatin-modifying enzymes as therapeutic targets--Part 2 |
Q27937089 | Cluster analysis of mass spectrometry data reveals a novel component of SAGA |
Q27932566 | Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes |
Q26777171 | Composition of the SAGA complex in plants and its role in controlling gene expression in response to abiotic stresses |
Q35450959 | Conformational flexibility and subunit arrangement of the modular yeast Spt-Ada-Gcn5 acetyltransferase complex |
Q59070695 | Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination |
Q27932002 | Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5. |
Q37275279 | Controlling histone methylation via trans-histone pathways |
Q41005310 | Cooperation between SAGA and SWI/SNF complexes is required for efficient transcriptional responses regulated by the yeast MAPK Slt2. |
Q39249006 | Coordinated Actions of MicroRNAs with other Epigenetic Factors Regulate Skeletal Muscle Development and Adaptation |
Q37777788 | Core histone H2A ubiquitylation and transcriptional regulation |
Q38973004 | Cotranscriptional histone H2B monoubiquitylation is tightly coupled with RNA polymerase II elongation rate |
Q36994153 | Covalent modifications of histones during development and disease pathogenesis |
Q36994157 | Cross-regulation of histone modifications |
Q36226144 | Cross-talking histones: implications for the regulation of gene expression and DNA repair |
Q41559771 | Cryo-EM structure of the SAGA and NuA4 coactivator subunit Tra1 at 3.7 angstrom resolution |
Q35642090 | Ctk complex-mediated regulation of histone methylation by COMPASS. |
Q58759904 | DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis |
Q38336126 | DUBs, the regulation of cell identity and disease |
Q37069551 | Deciphering histone 2A deubiquitination |
Q38695071 | Decision for cell fate: deubiquitinating enzymes in cell cycle checkpoint |
Q35056454 | Decoding the trans-histone crosstalk: methods to analyze H2B ubiquitination, H3 methylation and their regulatory factors. |
Q37358677 | Decreased histone H2B monoubiquitination in malignant gastric carcinoma |
Q36678362 | Depletion of the novel p53-target gene carnitine palmitoyltransferase 1C delays tumor growth in the neurofibromatosis type I tumor model |
Q33195734 | Deubiquitination of histone H2B by a yeast acetyltransferase complex regulates transcription. |
Q43064198 | Deubiquitylating enzyme UBP64 controls cell fate through stabilization of the transcriptional repressor tramtrack |
Q28585918 | Deubiquitylation of histone H2A activates transcriptional initiation via trans-histone cross-talk with H3K4 di- and trimethylation |
Q90575977 | Dissenting degradation: Deubiquitinases in cell cycle and cancer |
Q34478777 | Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID |
Q35203861 | Divergence and selectivity of expression-coupled histone modifications in budding yeasts |
Q28469221 | Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans |
Q46495750 | Down-regulation of Pkc1-mediated signaling by the deubiquitinating enzyme Ubp3. |
Q96950736 | Dynamic modules of the coactivator SAGA in eukaryotic transcription |
Q47104531 | E3 ubiquitin ligase Bre1 couples sister chromatid cohesion establishment to DNA replication in Saccharomyces cerevisiae. |
Q28594870 | EPOP Interacts with Elongin BC and USP7 to Modulate the Chromatin Landscape |
Q27936758 | Effectors of lysine 4 methylation of histone H3 in Saccharomyces cerevisiae are negative regulators of PHO5 and GAL1-10. |
Q35910114 | Emerging Views on the CTD Code |
Q39554519 | Enzymatic assays for assessing histone deubiquitylation activity. |
Q58597542 | Epigenetic mechanisms and implications in tendon inflammation (Review) |
Q38018086 | Epigenetic mechanisms in gastric cancer |
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Q36164758 | Epigenome programming by Polycomb and Trithorax proteins. |
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Q35860533 | Feedback Control of Snf1 Protein and Its Phosphorylation Is Necessary for Adaptation to Environmental Stress |
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Q35577991 | Flickin' the ubiquitin switch: the role of H2B ubiquitylation in development |
Q26781247 | Functional Role of G9a Histone Methyltransferase in Cancer |
Q36742165 | Functional analysis of Bre1p, an E3 ligase for histone H2B ubiquitylation, in regulation of RNA polymerase II association with active genes and transcription in vivo |
Q42685039 | Functional analysis of H2B-Lys-123 ubiquitination in regulation of H3-Lys-4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo |
Q37468898 | Functional connection between histone acetyltransferase Gcn5p and methyltransferase Hmt1p |
Q26744570 | Functions of Ubiquitin and SUMO in DNA Replication and Replication Stress |
Q33493740 | Gcn5 and SAGA regulate shelterin protein turnover and telomere maintenance. |
Q42065419 | Gcn5 facilitates Pol II progression, rather than recruitment to nucleosome-depleted stress promoters, in Schizosaccharomyces pombe. |
Q35917883 | Gcn5p-dependent acetylation induces degradation of the meiotic transcriptional repressor Ume6p |
Q36994161 | Gene regulation through nuclear organization. |
Q36076885 | Genetic evidence links the ASTRA protein chaperone component Tti2 to the SAGA transcription factor Tra1. |
Q35124229 | Genetic interactions between POB3 and the acetylation of newly synthesized histones |
Q39196606 | Genome-wide function of H2B ubiquitylation in promoter and genic regions |
Q35681247 | Getting into position: the catalytic mechanisms of protein ubiquitylation |
Q38324759 | Global loss of Set1-mediated H3 Lys4 trimethylation is associated with silencing defects in Saccharomyces cerevisiae |
Q35294605 | H2B mono-ubiquitylation facilitates fork stalling and recovery during replication stress by coordinating Rad53 activation and chromatin assembly |
Q36021719 | H2B monoubiquitylation is a 5'-enriched active transcription mark and correlates with exon-intron structure in human cells |
Q27939759 | H2B ubiquitin protease Ubp8 and Sgf11 constitute a discrete functional module within the Saccharomyces cerevisiae SAGA complex. |
Q34107829 | H2B ubiquitylation is part of chromatin architecture that marks exon-intron structure in budding yeast. |
Q92686725 | Histone 2B monoubiquitination complex integrates transcript elongation with RNA processing at circadian clock and flowering regulators |
Q24309403 | Histone H2A deubiquitinase activity of the Polycomb repressive complex PR-DUB |
Q24642681 | Histone H2A monoubiquitination represses transcription by inhibiting RNA polymerase II transcriptional elongation |
Q33963926 | Histone H2B C-terminal helix mediates trans-histone H3K4 methylation independent of H2B ubiquitination. |
Q53440183 | Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice. |
Q83012234 | Histone H2B deubiquitination is required for transcriptional activation of FLOWERING LOCUS C and for proper control of flowering in Arabidopsis |
Q34350965 | Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis |
Q33346128 | Histone H2B monoubiquitination in the chromatin of FLOWERING LOCUS C regulates flowering time in Arabidopsis |
Q26825542 | Histone H2B monoubiquitination: roles to play in human malignancy |
Q35592200 | Histone H2B ubiquitination and beyond: Regulation of nucleosome stability, chromatin dynamics and the trans-histone H3 methylation |
Q41984790 | Histone H2B ubiquitination promotes the function of the anaphase-promoting complex/cyclosome in Schizosaccharomyces pombe |
Q37361776 | Histone H2B ubiquitination: the cancer connection |
Q36238608 | Histone H2B ubiquitylation and deubiquitylation in genomic regulation. |
Q27936299 | Histone H2B ubiquitylation is associated with elongating RNA polymerase II |
Q37454264 | Histone H2B ubiquitylation is not required for histone H3 methylation at lysine 4 in tetrahymena |
Q36896407 | Histone H2B ubiquitylation represses gametogenesis by opposing RSC-dependent chromatin remodeling at the ste11 master regulator locus. |
Q37309152 | Histone H2BK123 monoubiquitination is the critical determinant for H3K4 and H3K79 trimethylation by COMPASS and Dot1. |
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Q39891491 | Histone H3 Ser10 phosphorylation-independent function of Snf1 and Reg1 proteins rescues a gcn5- mutant in HIS3 expression |
Q33930752 | Histone H3 phosphorylation can promote TBP recruitment through distinct promoter-specific mechanisms |
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Q37087015 | Histone modifications: Now summoning sumoylation |
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Q36078818 | Histone monoubiquitylation position determines specificity and direction of enzymatic cross-talk with histone methyltransferases Dot1L and PRC2. |
Q24545952 | Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications |
Q35971184 | Histone ubiquitination and deubiquitination in transcription, DNA damage response, and cancer |
Q28081194 | Histone ubiquitylation and its roles in transcription and DNA damage response |
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Q24299488 | Human USP3 is a chromatin modifier required for S phase progression and genome stability |
Q89503067 | Hydrazide Mimics for Protein Lysine Acylation To Assess Nucleosome Dynamics and Deubiquitinase Action |
Q42096517 | Identification of Pep4p as the protease responsible for formation of the SAGA-related SLIK protein complex |
Q36119924 | Identification of chromatin-associated regulators of MSL complex targeting in Drosophila dosage compensation |
Q37737546 | Inducible gene expression: diverse regulatory mechanisms |
Q34671609 | Innate and adaptive factors regulating human immunodeficiency virus type 1 genomic activation. |
Q37553936 | Insights into SAGA function during gene expression |
Q36323434 | Interaction of the Jhd2 Histone H3 Lys-4 Demethylase with Chromatin Is Controlled by Histone H2A Surfaces and Restricted by H2B Ubiquitination |
Q37797693 | Interplay Between Different Epigenetic Modifications and Mechanisms |
Q35476430 | Invadolysin acts genetically via the SAGA complex to modulate chromosome structure. |
Q35091097 | Involvement of KDM1C histone demethylase-OTLD1 otubain-like histone deubiquitinase complexes in plant gene repression |
Q89126426 | Light and temperature shape nuclear architecture and gene expression |
Q37418113 | Light behind the curtain: photoregulation of nuclear architecture and chromatin dynamics in plants |
Q41888822 | Light-induced nuclear export reveals rapid dynamics of epigenetic modifications |
Q91890923 | LncRNA ODIR1 inhibits osteogenic differentiation of hUC-MSCs through the FBXO25/H2BK120ub/H3K4me3/OSX axis |
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Q36580193 | Mapping histone modifications by nucleosome immunoprecipitation |
Q24307834 | Metabolism, cytoskeleton and cellular signalling in the grip of protein Nepsilon - and O-acetylation |
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Q30443104 | Multi-tasking on chromatin with the SAGA coactivator complexes |
Q42045741 | Multiple faces of the SAGA complex |
Q27931794 | Multiple roles for the Ess1 prolyl isomerase in the RNA polymerase II transcription cycle |
Q27930623 | Mutational analysis of the C-terminal FATC domain of Saccharomyces cerevisiae Tra1. |
Q27933670 | Mutational uncoupling of the role of Sus1 in nuclear pore complex targeting of an mRNA export complex and histone H2B deubiquitination |
Q40251253 | Ni(II) affects ubiquitination of core histones H2B and H2A. |
Q90185691 | Nipped-A regulates the Drosophila circadian clock via histone deubiquitination |
Q33963762 | Novel trans-tail regulation of H2B ubiquitylation and H3K4 methylation by the N terminus of histone H2A. |
Q42114752 | Nucleosomal H2B ubiquitylation with purified factors |
Q46268719 | On your MARKS, get SET, METHYLATE! |
Q42598151 | Paf1 restricts Gcn4 occupancy and antisense transcription at the ARG1 promoter |
Q30445180 | Phosphorylation of histone H4 Ser1 regulates sporulation in yeast and is conserved in fly and mouse spermatogenesis. |
Q89621389 | Plant Chromatin Catches the Sun |
Q36854975 | Polyubiquitylation of histone H2B. |
Q42609408 | Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation |
Q26852536 | Post-translational modifications of histones that influence nucleosome dynamics |
Q33370815 | Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants |
Q39673659 | Promotion of Cell Viability and Histone Gene Expression by the Acetyltransferase Gcn5 and the Protein Phosphatase PP2A in Saccharomyces cerevisiae. |
Q37249177 | Protein modifications in transcription elongation |
Q36554464 | Protein monoubiquitylation: targets and diverse functions |
Q36199691 | Proteomic analysis revealed nitrogen-mediated metabolic, developmental, and hormonal regulation of maize (Zea mays L.) ear growth |
Q30375585 | Quantitative proteomic analysis of histone modifications |
Q40406028 | Quantitative sequential chromatin immunoprecipitation, a method for analyzing co-occupancy of proteins at genomic regions in vivo |
Q36029959 | RNF20 and USP44 regulate stem cell differentiation by modulating H2B monoubiquitylation |
Q34995984 | RNF20 inhibits TFIIS-facilitated transcriptional elongation to suppress pro-oncogenic gene expression |
Q37914341 | RNF20-RNF40: A ubiquitin-driven link between gene expression and the DNA damage response. |
Q26799882 | RNF20-SNF2H Pathway of Chromatin Relaxation in DNA Double-Strand Break Repair |
Q27930655 | Rad6 plays a role in transcriptional activation through ubiquitylation of histone H2B. |
Q27932934 | Rad6-Bre1-mediated histone H2B ubiquitylation modulates the formation of double-strand breaks during meiosis |
Q41999449 | Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing |
Q39030776 | Recognition of ubiquitinated nucleosomes. |
Q28270922 | Recombination-activating gene proteins: more regulation, please |
Q24645701 | Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes |
Q39705425 | Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae. |
Q24793292 | Regulation of androgen receptor and histone deacetylase 1 by Mdm2-mediated ubiquitylation |
Q24296401 | Regulation of cell cycle progression and gene expression by H2A deubiquitination |
Q34606198 | Regulation of histone H2A and H2B deubiquitination and Xenopus development by USP12 and USP46. |
Q42070422 | Regulation of mitochondrial morphology by USP30, a deubiquitinating enzyme present in the mitochondrial outer membrane |
Q38855269 | Regulation of pluripotency and differentiation by deubiquitinating enzymes |
Q33431467 | Requirements for E1A dependent transcription in the yeast Saccharomyces cerevisiae |
Q35105237 | Rescue of DNA damage-stalled RNA Pol II: histone H2B in action |
Q48014985 | Retracted: Histone H2B ubquitination regulates retinoic acid signaling through the cooperation of ASXL1 and BAP1. |
Q26773800 | Role of Deubiquitinating Enzymes in DNA Repair |
Q41493041 | Role of Doa1 in the Saccharomyces cerevisiae DNA damage response |
Q24305090 | Role of histone H2A ubiquitination in Polycomb silencing |
Q34115523 | Rrd1p, an RNA polymerase II-specific prolyl isomerase and activator of phosphoprotein phosphatase, promotes transcription independently of rapamycin response |
Q27929974 | Rtf1 is a multifunctional component of the Paf1 complex that regulates gene expression by directing cotranscriptional histone modification |
Q36574522 | SAGA DUB-Ubp8 Deubiquitylates Centromeric Histone Variant Cse4. |
Q92531896 | SAGA DUBm-mediated surveillance regulates prompt export of stress-inducible transcripts for proteostasis |
Q47790116 | SAGA Is a General Cofactor for RNA Polymerase II Transcription. |
Q41620842 | SAGA complex components and acetate repression in Aspergillus nidulans |
Q42552805 | SAGA function in tissue-specific gene expression |
Q27934681 | SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo |
Q41953553 | SAGA-mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system |
Q53556000 | SIN-fully silent: HDAC complexes in fission yeast. |
Q36421035 | STAGA recruits Mediator to the MYC oncoprotein to stimulate transcription and cell proliferation |
Q42289702 | Sas3 and Ada2(Gcn5)-dependent histone H3 acetylation is required for transcription elongation at the de-repressed FLO1 gene. |
Q21129202 | Seed dormancy and germination-emerging mechanisms and new hypotheses |
Q61207709 | Separation of a functional deubiquitylating module from the SAGA complex by the proteasome regulatory particle |
Q27930044 | Sgf29p facilitates the recruitment of TATA box binding protein but does not alter SAGA's global structural integrity in vivo |
Q36073403 | Shaping the landscape: mechanistic consequences of ubiquitin modification of chromatin. |
Q47721313 | Sharing the SAGA. |
Q28511362 | Silencing of unpaired chromatin and histone H2A ubiquitination in mammalian meiosis |
Q27026725 | Single molecule and single cell epigenomics. |
Q36079423 | Small region of Rtf1 protein can substitute for complete Paf1 complex in facilitating global histone H2B ubiquitylation in yeast |
Q33628559 | Snf1p regulates Gcn5p transcriptional activity by antagonizing Spt3p |
Q35559126 | Splitting the task: Ubp8 and Ubp10 deubiquitinate different cellular pools of H2BK123. |
Q27661081 | Structural Basis for Assembly and Activation of the Heterotetrameric SAGA Histone H2B Deubiquitinase Module |
Q27660560 | Structural Insights into the Assembly and Function of the SAGA Deubiquitinating Module |
Q42196568 | Structural and biochemical analyses of monoubiquitinated human histones H2B and H4. |
Q36892380 | Structural basis for histone H2B deubiquitination by the SAGA DUB module. |
Q27646584 | Structural basis for the interaction between yeast Spt-Ada-Gcn5 acetyltransferase (SAGA) complex components Sgf11 and Sus1. |
Q45889376 | Structure of the transcription activator target Tra1 within the chromatin modifying complex SAGA. |
Q92860926 | Structure of the transcription coactivator SAGA |
Q36942429 | Sus1 is recruited to coding regions and functions during transcription elongation in association with SAGA and TREX2. |
Q38051409 | Sus1/ENY2: a multitasking protein in eukaryotic gene expression |
Q33940735 | Sus1p facilitates pre-initiation complex formation at the SAGA-regulated genes independently of histone H2B de-ubiquitylation |
Q24545962 | TFIID and Spt-Ada-Gcn5-acetyltransferase functions probed by genome-wide synthetic genetic array analysis using a Saccharomyces cerevisiae taf9-ts allele |
Q53201323 | Targeting the epigenome for treatment of cancer. |
Q41841500 | Temperature-sensitive post-translational regulation of plant omega-3 fatty-acid desaturases is mediated by the endoplasmic reticulum-associated degradation pathway |
Q37592212 | Temporal and spatial regulation of V(D)J recombination: interactions of extrinsic factors with the RAG complex |
Q28742012 | The C-terminus of histone H2B is involved in chromatin compaction specifically at telomeres, independently of its monoubiquitylation at lysine 123 |
Q26765873 | The Importance of Ubiquitination and Deubiquitination in Cellular Reprogramming |
Q35104140 | The Ino80 complex prevents invasion of euchromatin into silent chromatin |
Q27935220 | The N-terminus and Tudor domains of Sgf29 are important for its heterochromatin boundary formation function |
Q35737433 | The Nucleosome Acidic Patch Regulates the H2B K123 Monoubiquitylation Cascade and Transcription Elongation in Saccharomyces cerevisiae |
Q27935853 | The Paf1 complex promotes displacement of histones upon rapid induction of transcription by RNA polymerase II |
Q42782209 | The Paf1 complex represses ARG1 transcription in Saccharomyces cerevisiae by promoting histone modifications |
Q38627903 | The Paf1 complex represses SER3 transcription in Saccharomyces cerevisiae by facilitating intergenic transcription-dependent nucleosome occupancy of the SER3 promoter |
Q52329552 | The Pseudokinase Domain of Saccharomyces cerevisiae Tra1 Is Required for Nuclear Localization and Incorporation into the SAGA and NuA4 Complexes. |
Q35811839 | The Roles of the Paf1 Complex and Associated Histone Modifications in Regulating Gene Expression |
Q36995417 | The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8. |
Q36955793 | The SAGA Deubiquitination Module Promotes DNA Repair and Class Switch Recombination through ATM and DNAPK-Mediated γH2AX Formation. |
Q34235677 | The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription. |
Q30438554 | The SAGA continues: expanding the cellular role of a transcriptional co-activator complex |
Q41521346 | The SAGA histone acetyltransferase complex regulates leucine uptake through the Agp3 permease in fission yeast |
Q34824438 | The SAGA histone deubiquitinase module controls yeast replicative lifespan via Sir2 interaction. |
Q51415405 | The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally. |
Q39761741 | The Spliceosomal Protein SF3B5 is a Novel Component of Drosophila SAGA that Functions in Gene Expression Independent of Splicing |
Q34769706 | The Spt-Ada-Gcn5 Acetyltransferase (SAGA) complex in Aspergillus nidulans |
Q35910444 | The Transition of Poised RNA Polymerase II to an Actively Elongating State Is a "Complex" Affair |
Q24337279 | The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination |
Q27932371 | The Ubp15 deubiquitinase promotes timely entry into S phase in Saccharomyces cerevisiae |
Q48081222 | The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy |
Q47069099 | The bromodomain protein LEX-1 acts with TAM-1 to modulate gene expression in C. elegans |
Q38352748 | The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA |
Q34566036 | The chromatin signaling pathway: diverse mechanisms of recruitment of histone-modifying enzymes and varied biological outcomes |
Q28131748 | The complex language of chromatin regulation during transcription |
Q27932453 | The deubiquitylation activity of Ubp8 is dependent upon Sgf11 and its association with the SAGA complex |
Q29614523 | The diverse functions of histone lysine methylation |
Q35666251 | The diverse superfamily of lysine acetyltransferases and their roles in leukemia and other diseases |
Q38008101 | The enigmatic role of H2Bub1 in cancer |
Q39140357 | The epigenetic modifier ubiquitin-specific protease 22 (USP22) regulates embryonic stem cell differentiation via transcriptional repression of sex-determining region Y-box 2 (SOX2). |
Q37186709 | The epigenetics of adult (somatic) stem cells |
Q24318500 | The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression |
Q24298372 | The human homolog of yeast BRE1 functions as a transcriptional coactivator through direct activator interactions |
Q49723158 | The interplay of histone H2B ubiquitination with budding and fission yeast heterochromatin. |
Q58616112 | The kinetochore module Okp1/Ame1 is a reader for N-terminal modifications on the centromeric histone Cse4 |
Q27940177 | The mRNA export factor Sus1 is involved in Spt/Ada/Gcn5 acetyltransferase-mediated H2B deubiquitinylation through its interaction with Ubp8 and Sgf11. |
Q37862125 | The multifaceted roles of USP7: new therapeutic opportunities |
Q36579378 | The multiple faces of Set1. |
Q92937229 | The nucleosome acidic patch directly interacts with subunits of the Paf1 and FACT complexes and controls chromatin architecture in vivo |
Q28240753 | The nucleosome: from genomic organization to genomic regulation |
Q24307439 | The putative cancer stem cell marker USP22 is a subunit of the human SAGA complex required for activated transcription and cell-cycle progression |
Q35147589 | The role of Candida albicans SPT20 in filamentation, biofilm formation and pathogenesis |
Q34564968 | The role of deubiquitinating enzymes in chromatin regulation. |
Q80188867 | The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1(K123R) Saccharomyces cerevisiae strain |
Q24338865 | The structural plasticity of SCA7 domains defines their differential nucleosome-binding properties |
Q34199540 | The tightly controlled deubiquitination activity of the human SAGA complex differentially modifies distinct gene regulatory elements |
Q50335555 | The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase |
Q33600336 | The ubiquitin-conjugating enzyme HR6B is required for maintenance of X chromosome silencing in mouse spermatocytes and spermatids. |
Q36268060 | The ubiquitin-proteasome system of Saccharomyces cerevisiae |
Q27934454 | The ubiquitin-selective chaperone Cdc48/p97 associates with Ubx3 to modulate monoubiquitylation of histone H2B. |
Q49601869 | The ubiquitin-specific protease USP36 is a conserved histone H2B deubiquitinase |
Q27937658 | The yeast SR-like protein Npl3 links chromatin modification to mRNA processing |
Q27937396 | Tight cooperation between Mot1p and NC2β in regulating genome-wide transcription, repression of transcription following heat shock induction and genetic interaction with SAGA |
Q24314891 | Trabid, a new positive regulator of Wnt-induced transcription with preference for binding and cleaving K63-linked ubiquitin chains |
Q57970965 | Transcription and mRNA export machineries SAGA and TREX-2 maintain monoubiquitinated H2B balance required for DNA repair |
Q38043829 | Transcription-associated histone modifications and cryptic transcription |
Q42133855 | Transcriptional elongation and mRNA export are coregulated processes. |
Q36040816 | Transcriptome Profiling Identifies Multiplexin as a Target of SAGA Deubiquitinase Activity in Glia Required for Precise Axon Guidance During Drosophila Visual Development |
Q36830110 | Treatment of Plasmodium chabaudi Parasites with Curcumin in Combination with Antimalarial Drugs: Drug Interactions and Implications on the Ubiquitin/Proteasome System |
Q92490294 | Two roles for the yeast transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA |
Q80049453 | Two tales of chromatin remodeling converge on HUB1 |
Q38953607 | Tyrosine phosphorylation of histone H2A by CK2 regulates transcriptional elongation |
Q42074560 | UBIQUITIN-SPECIFIC PROTEASE 26 is required for seed development and the repression of PHERES1 in Arabidopsis. |
Q88909318 | USP22 deficiency leads to myeloid leukemia upon oncogenic Kras activation through a PU.1-dependent mechanism |
Q34374287 | USP22 is useful as a novel molecular marker for predicting disease progression and patient prognosis of oral squamous cell carcinoma |
Q24311562 | USP22, an hSAGA subunit and potential cancer stem cell marker, reverses the polycomb-catalyzed ubiquitylation of histone H2A |
Q38729273 | USP44 Is an Integral Component of N-CoR that Contributes to Gene Repression by Deubiquitinating Histone H2B. |
Q24297433 | USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing |
Q34144605 | UV damage-induced RNA polymerase II stalling stimulates H2B deubiquitylation |
Q47359149 | Ubiquitin Specific Peptidase 22 Regulates Histone H2B Mono-Ubiquitination and Exhibits Both Oncogenic and Tumor Suppressor Roles in Cancer |
Q38702950 | Ubiquitin crosstalk connecting cellular processes |
Q26750743 | Ubiquitin-specific peptidase 22 functions and its involvement in disease |
Q38924763 | Ubiquitin-specific protease 22 (USP22) positively regulates RCAN1 protein levels through RCAN1 de-ubiquitination |
Q37679191 | Ubiquitination regulates the morphogenesis and function of sperm organelles |
Q33884138 | Ubp10/Dot4p regulates the persistence of ubiquitinated histone H2B: distinct roles in telomeric silencing and general chromatin |
Q35139409 | Ubp8 and SAGA regulate Snf1 AMP kinase activity. |
Q42222766 | Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo |
Q27931833 | Uncovering the role of Sgf73 in maintaining SAGA deubiquitinating module structure and activity |
Q43088502 | Using glycinylation, a chemical derivatization technique, for the quantitation of ubiquitinated proteins |
Q24293427 | WAC, a functional partner of RNF20/40, regulates histone H2B ubiquitination and gene transcription |
Q49911687 | Whole-Genome Sequencing of Suppressor DNA Mixtures Identifies Pathways That Compensate for Chromosome Segregation Defects in Schizosaccharomyces pombe. |
Q26742134 | Writers, Readers, and Erasers of Histone Ubiquitylation in DNA Double-Strand Break Repair |
Q27936733 | Yeast Ataxin-7 links histone deubiquitination with gene gating and mRNA export |
Q27935396 | Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes |
Q45954525 | dDsk2 regulates H2Bub1 and RNA polymerase II pausing at dHP1c complex target genes. |
Q35442854 | dRYBP counteracts chromatin-dependent activation and repression of transcription |
Q47134084 | let-7b and let-7c microRNAs promote histone H2B ubiquitylation and inhibit cell migration by targeting multiple components of the H2B deubiquitylation machinery |