Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways

scientific article

Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.CELL.2011.04.019
P3181OpenCitations bibliographic resource ID868735
P932PMC publication ID3383065
P698PubMed publication ID21565611
P5875ResearchGate publication ID51120407

P50authorDiane C SlusarskiQ55127328
Francesc R Garcia-GonzaloQ56264287
Rachel H GilesQ63372740
Jeremy F ReiterQ96200822
Kevin C CorbitQ114778446
Allen D SeolQ114778447
Friedhelm HildebrandtQ28050923
Edgar A. OttoQ30348357
P2093author name stringJohn F O'Toole
Muhammad Ansar
Lisa M Baye
Peter K Jackson
Val C Sheffield
William S Lane
Heiko M Reutter
Abdul Noor
John B Vincent
J Fernando Bazan
Wendy Sandoval
Mandy Kwong
Suzie J Scales
Xiaohui Wen
Priya Kulkarni
Matthew J Brauer
Liyun Sang
Akella Radha Rama Devi
Julie J Miller
Muhammad Arshad Rafiq
Erik G Huntzicker
Daniel A Doherty
Mindan K Sfakianos
Susanne Held
P2860cites workInduction of motor neurons by Sonic hedgehog is independent of floor plate differentiationQ71725603
Rhodopsin transport in the membrane of the connecting cilium of mammalian photoreceptor cellsQ73986028
A systematic approach to mapping recessive disease genes in individuals from outbred populationsQ21145017
Mutations in the cilia gene ARL13B lead to the classical form of Joubert syndromeQ21710711
Identification of CC2D2A as a Meckel syndrome gene adds an important piece to the ciliopathy puzzleQ21710712
Towards a proteome-scale map of the human protein–protein interaction networkQ21735930
Hedgehog-regulated processing of Gli3 produces an anterior/posterior repressor gradient in the developing vertebrate limbQ22253250
Nephrocystin-5, a ciliary IQ domain protein, is mutated in Senior-Loken syndrome and interacts with RPGR and calmodulinQ24295284
Nephrocystin-conserved domains involved in targeting to epithelial cell-cell junctions, interaction with filamins, and establishing cell polarityQ24297187
Nephrocystin specifically localizes to the transition zone of renal and respiratory cilia and photoreceptor connecting ciliaQ24298711
Ataxin 10 induces neuritogenesis via interaction with G-protein beta2 subunitQ24305547
A gene mutated in nephronophthisis and retinitis pigmentosa encodes a novel protein, nephroretinin, conserved in evolutionQ24305835
NEK8 mutations affect ciliary and centrosomal localization and may cause nephronophthisisQ24306642
The gene mutated in juvenile nephronophthisis type 4 encodes a novel protein that interacts with nephrocystinQ24307506
Mutations in the gene encoding the basal body protein RPGRIP1L, a nephrocystin-4 interactor, cause Joubert syndromeQ24308692
Functional interactions between the ciliopathy-associated Meckel syndrome 1 (MKS1) protein and two novel MKS1-related (MKSR) proteinsQ24310078
Mutations in a novel gene, NPHP3, cause adolescent nephronophthisis, tapeto-retinal degeneration and hepatic fibrosisQ24310102
A core complex of BBS proteins cooperates with the GTPase Rab8 to promote ciliary membrane biogenesisQ24311615
Nephrocystin-3 is required for ciliary function in zebrafish embryosQ24312027
Loss of nephrocystin-3 function can cause embryonic lethality, Meckel-Gruber-like syndrome, situs inversus, and renal-hepatic-pancreatic dysplasiaQ24315070
Defining the human deubiquitinating enzyme interaction landscapeQ24315885
A protein domain-based interactome network for C. elegans early embryogenesisQ24322661
INPP5E mutations cause primary cilium signaling defects, ciliary instability and ciliopathies in human and mouseQ24323384
The centrosomal protein nephrocystin-6 is mutated in Joubert syndrome and activates transcription factor ATF4Q24336477
A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degenerationQ24337490
Cep97 and CP110 suppress a cilia assembly programQ24338361
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
Mutations in the AHI1 gene, encoding jouberin, cause Joubert syndrome with cortical polymicrogyriaQ24534179
Nephrocystin interacts with Pyk2, p130(Cas), and tensin and triggers phosphorylation of Pyk2Q24555759
CP110 suppresses primary cilia formation through its interaction with CEP290, a protein deficient in human ciliary diseaseQ24568058
Mutations in TMEM216 perturb ciliogenesis and cause Joubert, Meckel and related syndromesQ24625476
The role of primary cilia in neuronal functionQ24632925
CC2D2A is mutated in Joubert syndrome and interacts with the ciliopathy-associated basal body protein CEP290Q24644138
MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure informationQ24646301
CC2D2A mutations in Meckel and Joubert syndromes indicate a genotype-phenotype correlationQ24650658
Mutations in INPP5E, encoding inositol polyphosphate-5-phosphatase E, link phosphatidyl inositol signaling to the ciliopathiesQ24651557
SMART 6: recent updates and new developmentsQ24655795
In-frame deletion in a novel centrosomal/ciliary protein CEP290/NPHP6 perturbs its interaction with RPGR and results in early-onset retinal degeneration in the rd16 mouseQ24671808
The human disease networkQ24678240
Small-molecule modulators of Hedgehog signaling: identification and characterization of Smoothened agonists and antagonistsQ24794838
High-throughput generation of tagged stable cell lines for proteomic analysisQ27331566
The PSIPRED protein structure prediction serverQ27860953
Vertebrate Smoothened functions at the primary ciliumQ27919682
Tectonic, a novel regulator of the Hedgehog pathway required for both activation and inhibition.Q27919686
Identification of 23 complementation groups required for post-translational events in the yeast secretory pathwayQ27931724
The exocyst protein Sec10 is necessary for primary ciliogenesis and cystogenesis in vitroQ27967643
Multiprotein complexes of Retinitis Pigmentosa GTPase regulator (RPGR), a ciliary protein mutated in X-linked Retinitis Pigmentosa (XLRP).Q28114957
Nephrocystin-1 and nephrocystin-4 are required for epithelial morphogenesis and associate with PALS1/PATJ and Par6Q28116478
Genetic and physical interaction between the NPHP5 and NPHP6 gene productsQ28118065
Characterization of the nephrocystin/nephrocystin-4 complex and subcellular localization of nephrocystin-4 to primary cilia and centrosomesQ28119088
Intraflagellar transportQ28131775
Crk-associated substrate p130(Cas) interacts with nephrocystin and both proteins localize to cell-cell contacts of polarized epithelial cellsQ28140138
Mutations in INVS encoding inversin cause nephronophthisis type 2, linking renal cystic disease to the function of primary cilia and left-right axis determinationQ28188363
A novel gene encoding an SH3 domain protein is mutated in nephronophthisis type 1Q28250958
Protein homology detection by HMM-HMM comparisonQ28292161
Impaired Wnt-beta-catenin signaling disrupts adult renal homeostasis and leads to cystic kidney ciliopathyQ28506100
Disruption of Bardet-Biedl syndrome ciliary proteins perturbs planar cell polarity in vertebratesQ28506652
A mouse model for Meckel syndrome reveals Mks1 is required for ciliogenesis and Hedgehog signalingQ28507443
Homeobox gene Nkx2.2 and specification of neuronal identity by graded Sonic hedgehog signallingQ28508806
Pax6 controls progenitor cell identity and neuronal fate in response to graded Shh signalingQ28571762
Inv acts as a molecular anchor for Nphp3 and Nek8 in the proximal segment of primary ciliaQ28585433
Loss of GLIS2 causes nephronophthisis in humans and mice by increased apoptosis and fibrosisQ28586772
Hedgehog signalling in the mouse requires intraflagellar transport proteinsQ28593010
Chlamydomonas IFT88 and its mouse homologue, polycystic kidney disease gene tg737, are required for assembly of cilia and flagellaQ28593253
Kif3a constrains beta-catenin-dependent Wnt signalling through dual ciliary and non-ciliary mechanismsQ29614613
Inversin, the gene product mutated in nephronophthisis type II, functions as a molecular switch between Wnt signaling pathwaysQ29614619
CEP290 tethers flagellar transition zone microtubules to the membrane and regulates flagellar protein content.Q29614822
Kupffer's vesicle is a ciliated organ of asymmetry in the zebrafish embryo that initiates left-right development of the brain, heart and gut.Q31147995
Kinome siRNA screen identifies regulators of ciliogenesis and hedgehog signal transductionQ33373007
Nephronophthisis: disease mechanisms of a ciliopathyQ33594278
Meckel syndromeQ33680876
The NPHP1 gene deletion associated with juvenile nephronophthisis is present in a subset of individuals with Joubert syndromeQ33909988
Large expansion of the ATTCT pentanucleotide repeat in spinocerebellar ataxia type 10.Q33920052
MKS1, encoding a component of the flagellar apparatus basal body proteome, is mutated in Meckel syndromeQ34485076
The transmembrane protein meckelin (MKS3) is mutated in Meckel-Gruber syndrome and the wpk rat.Q34485086
The roles of cilia in developmental disorders and diseaseQ34571559
Nephronophthisis-associated ciliopathiesQ34629900
Pleiotropic effects of CEP290 (NPHP6) mutations extend to Meckel syndromeQ34636894
The C. elegans homologs of nephrocystin-1 and nephrocystin-4 are cilia transition zone proteins involved in chemosensory perceptionQ34651267
Opinion: Building epithelial architecture: insights from three-dimensional culture modelsQ34718096
Pattern formation in the vertebrate neural tube: a sonic hedgehog morphogen-regulated transcriptional networkQ34795340
The renal cell primary cilium functions as a flow sensorQ35200478
Disruption of intraflagellar transport in adult mice leads to obesity and slow-onset cystic kidney diseaseQ36156370
Cilia and centrosomes: a unifying pathogenic concept for cystic kidney disease?Q36337939
The emerging complexity of the vertebrate cilium: new functional roles for an ancient organelleQ36529285
Functional redundancy of the B9 proteins and nephrocystins in Caenorhabditis elegans ciliogenesisQ36631120
Mechanistic insights into Bardet-Biedl syndrome, a model ciliopathyQ37111349
HNF-3 beta as a regulator of floor plate developmentQ38312151
Interaction of ciliary disease protein retinitis pigmentosa GTPase regulator with nephronophthisis-associated proteins in mammalian retinasQ46753643
Joubert syndrome (and related disorders) (OMIM 213300).Q48232417
Local modeling of global interactome networksQ48482764
Origin and shaping of the laterality organ in zebrafish.Q51952307
P4510describes a project that usesCytoscapeQ3699942
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectciliopathyQ203031
MKS complexQ21110523
Nephrocystin 1Q21113785
Nephrocystin 4Q21118162
RPGRIP1 likeQ21118164
P304page(s)513-28
P577publication date2011-05-13
P1433published inCellQ655814
P1476titleMapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways
P478volume145

Reverse relations

cites work (P2860)
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Q36008733RPGR: Its role in photoreceptor physiology, human disease, and future therapies.
Q59136535RPGRIP1L helps to establish the ciliary gate for entry of proteins
Q64233670RPGRIP1L is required for stabilizing epidermal keratinocyte adhesion through regulating desmoglein endocytosis
Q55116641Rare copy number variants analysis identifies novel candidate genes in heterotaxy syndrome patients with congenital heart defects.
Q36681693Rationalising the role of Keratin 9 as a biomarker for Alzheimer's disease
Q47737330Recent advances in the molecular diagnosis of polycystic kidney disease
Q50297235Recruitment of transition zone proteins
Q42054127Regulated membrane protein entry into flagella is facilitated by cytoplasmic microtubules and does not require IFT.
Q38916274Regulation of centriolar satellite integrity and its physiology
Q34427583Renal-retinal ciliopathy gene Sdccag8 regulates DNA damage response signaling
Q61811497Rescue of cone function in cone-only knockout mouse model with Leber congenital amaurosis phenotype
Q38074339Ripples in the pond--using a systems approach to decipher the cellular functions of membrane microdomains
Q93078954Role for intraflagellar transport in building a functional transition zone
Q39164306Role of Polarity Proteins in the Generation and Organization of Apical Surface Protrusions
Q47274594Rpgrip1 is required for rod outer segment development and ciliary protein trafficking in zebrafish
Q36029226SDCCAG8 Interacts with RAB Effector Proteins RABEP2 and ERC1 and Is Required for Hedgehog Signaling
Q51576891STED and STORM Superresolution Imaging of Primary Cilia.
Q36027360Scoring a backstage pass: mechanisms of ciliogenesis and ciliary access.
Q38821382Screen-based identification and validation of four new ion channels as regulators of renal ciliogenesis
Q27025614Scrutinizing ciliopathies by unraveling ciliary interaction networks
Q64096712Secreted metalloproteases ADAMTS9 and ADAMTS20 have a non-canonical role in ciliary vesicle growth during ciliogenesis
Q52726088Sending mixed signals: Cilia-dependent signaling during development and disease.
Q36417359Senior-Løken syndrome: a syndromic form of retinal dystrophy associated with nephronophthisis
Q38665385Shared and Distinct Mechanisms of Compartmentalized and Cytosolic Ciliogenesis
Q38866633Skp2-Mediated RagA Ubiquitination Elicits a Negative Feedback to Prevent Amino-Acid-Dependent mTORC1 Hyperactivation by Recruiting GATOR1.
Q26829936Smelling the roses and seeing the light: gene therapy for ciliopathies
Q91828623Spectrin-based membrane skeleton supports ciliogenesis
Q42485675Structural basis of the Inv compartment and ciliary abnormalities in Inv/nphp2 mutant mice
Q88983112Super-Resolution Imaging Reveals TCTN2 Depletion-Induced IFT88 Lumen Leakage and Ciliary Weakening
Q46168591Super-resolution microscopy reveals that disruption of ciliary transition-zone architecture causes Joubert syndrome
Q33888840Supernumerary centrosomes nucleate extra cilia and compromise primary cilium signaling
Q36056355Superresolution Pattern Recognition Reveals the Architectural Map of the Ciliary Transition Zone
Q29871526Systematic proteomics of the VCP-UBXD adaptor network identifies a role for UBXN10 in regulating ciliogenesis.
Q38261110Systemic diseases associated with retinal dystrophies
Q47314856TCTN2: a novel tumor marker with oncogenic properties
Q24295300TCTN3 mutations cause Mohr-Majewski syndrome
Q35394882TMEM231, mutated in orofaciodigital and Meckel syndromes, organizes the ciliary transition zone.
Q24299114TMEM237 is mutated in individuals with a Joubert syndrome related disorder and expands the role of the TMEM family at the ciliary transition zone
Q38463883TTBK2: a tau protein kinase beyond tau phosphorylation
Q37488595Tackling Primary Cilia Dysfunction in Photoreceptor Degenerative Diseases of the Eye.
Q55616467Targeted deletion of the AAA-ATPase Ruvbl1 in mice disrupts ciliary integrity and causes renal disease and hydrocephalus.
Q37223757Targeted exome sequencing resolves allelic and the genetic heterogeneity in the genetic diagnosis of nephronophthisis-related ciliopathy
Q92186510Targeted exon skipping rescues ciliary protein composition defects in Joubert syndrome patient fibroblasts
Q51576915Targeting of ASH Domain-Containing Proteins to the Centrosome.
Q30842355Tectonic gene mutations in patients with Joubert syndrome.
Q28000111The Arf GAP ASAP1 provides a platform to regulate Arf4- and Rab11-Rab8-mediated ciliary receptor targeting
Q47660256The Arf GEF GBF1 and Arf4 synergize with the sensory receptor cargo, rhodopsin, to regulate ciliary membrane trafficking.
Q28508183The Arf and Rab11 effector FIP3 acts synergistically with ASAP1 to direct Rabin8 in ciliary receptor targeting
Q42449688The C175R mutation alters nuclear localization and transcriptional activity of the nephronophthisis NPHP7 gene product.
Q41412960The CEP19-RABL2 GTPase Complex Binds IFT-B to Initiate Intraflagellar Transport at the Ciliary Base
Q33654636The Ciliary Transition Zone: Finding the Pieces and Assembling the Gate
Q35814872The Ciliopathy Protein CC2D2A Associates with NINL and Functions in RAB8-MICAL3-Regulated Vesicle Trafficking
Q38828900The Interaction of CCDC104/BARTL1 with Arl3 and Implications for Ciliary Function
Q42468036The MST1/2-SAV1 complex of the Hippo pathway promotes ciliogenesis
Q30540974The Meckel syndrome protein meckelin (TMEM67) is a key regulator of cilia function but is not required for tissue planar polarity.
Q42477783The Meckel-Gruber syndrome protein TMEM67 controls basal body positioning and epithelial branching morphogenesis in mice via the non-canonical Wnt pathway
Q30505167The Nek8 protein kinase, mutated in the human cystic kidney disease nephronophthisis, is both activated and degraded during ciliogenesis
Q92339716The RNA-Protein Interactome of Differentiated Kidney Tubular Epithelial Cells
Q28592935The Rilp-like proteins Rilpl1 and Rilpl2 regulate ciliary membrane content.
Q60934459The Roles of Primary Cilia in Cardiovascular Diseases
Q26859938The awesome power of dikaryons for studying flagella and basal bodies in Chlamydomonas reinhardtii
Q26825968The base of the cilium: roles for transition fibres and the transition zone in ciliary formation, maintenance and compartmentalization
Q24337792The centriolar satellite protein AZI1 interacts with BBS4 and regulates ciliary trafficking of the BBSome
Q24338335The centrosomal kinase Plk1 localizes to the transition zone of primary cilia and induces phosphorylation of nephrocystin-1
Q87557971The challenges and surprises of a definitive molecular genetic diagnosis
Q26746930The cilia-regulated proteasome and its role in the development of ciliopathies and cancer
Q28586620The ciliary protein Nek8/Nphp9 acts downstream of Inv/Nphp2 during pronephros morphogenesis and left-right establishment in zebrafish
Q90740314The ciliary protein Rpgrip1l in development and disease
Q28116639The ciliary protein nephrocystin-4 translocates the canonical Wnt regulator Jade-1 to the nucleus to negatively regulate β-catenin signaling
Q35166357The ciliary proteins Meckelin and Jouberin are required for retinoic acid-dependent neural differentiation of mouse embryonic stem cells
Q41306445The ciliary transition zone functions in cell adhesion but is dispensable for axoneme assembly in C. elegans
Q35902400The ciliary transition zone: from morphology and molecules to medicine
Q36433131The ciliopathies: a transitional model into systems biology of human genetic disease
Q45354108The ciliopathy disease protein NPHP9 promotes nuclear delivery and activation of the oncogenic transcriptional regulator TAZ.
Q35122197The ciliopathy gene Rpgrip1l is essential for hair follicle development
Q35225255The ciliopathy gene cc2d2a controls zebrafish photoreceptor outer segment development through a role in Rab8-dependent vesicle trafficking
Q37161998The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery
Q38870745The cilium: a cellular antenna with an influence on obesity risk
Q35930524The essential roles of transition fibers in the context of cilia
Q50297250The exocyst complex binds to RAB3IP in the ciliary targeting complex
Q38028167The extracellular matrix and ciliary signaling
Q30424945The future of ciliary and flagellar membrane research
Q91939504The genetics of isolated and syndromic clubfoot
Q43062596The long reach of noncoding RNAs
Q37689840The molecular basis of retinal dystrophies in pakistan.
Q37683931The molecular motor Myosin Va interacts with the cilia-centrosomal protein RPGRIP1L.
Q34679993The nphp-2 and arl-13 genetic modules interact to regulate ciliogenesis and ciliary microtubule patterning in C. elegans
Q58775693The nucleoside-diphosphate kinase NME3 associates with nephronophthisis proteins and is required for ciliary function during renal development
Q39202478The phosphatase Dullard negatively regulates BMP signalling and is essential for nephron maintenance after birth
Q27310080The polarity protein Inturned links NPHP4 to Daam1 to control the subapical actin network in multiciliated cells.
Q40839071The role of primary cilia in corpus callosum formation is mediated by production of the Gli3 repressor.
Q26822720The role of primary cilia in the development and disease of the retina
Q27026481The role of the cilium in normal and abnormal cell cycles: emphasis on renal cystic pathologies
Q24303418The spinocerebellar ataxia-associated gene Tau tubulin kinase 2 controls the initiation of ciliogenesis
Q42966406The transition zone: an essential functional compartment of cilia
Q60227665The “transition zone” of the cilium-like regions in the Drosophila spermatocytes and the role of the C-tubule in axoneme assembly
Q47963137Three Tctn proteins are functionally conserved in the regulation of neural tube patterning and Gli3 processing but not ciliogenesis and Hedgehog signaling in the mouse
Q52744506Transition Zone Migration: A Mechanism for Cytoplasmic Ciliogenesis and Postaxonemal Centriole Elongation.
Q28000146Transition fibre protein FBF1 is required for the ciliary entry of assembled intraflagellar transport complexes
Q37285434Transition zone assembly and its contribution to axoneme formation in Drosophila male germ cells.
Q28000062Transition zone proteins and cilia dynamics
Q97517880Two novel TCTN2 mutations cause Meckel-Gruber syndrome
Q33732138USP9X counteracts differential ubiquitination of NPHP5 by MARCH7 and BBS11 to regulate ciliogenesis
Q30407427Uni-directional ciliary membrane protein trafficking by a cytoplasmic retrograde IFT motor and ciliary ectosome shedding
Q38546971Unmasking the ciliopathies: craniofacial defects and the primary cilium
Q34326587VDAC3 and Mps1 negatively regulate ciliogenesis
Q34296794VDAC3 regulates centriole assembly by targeting Mps1 to centrosomes
Q28085636YAP and TAZ: a nexus for Hippo signaling and beyond
Q50624161[Primary cilia control different steps of brain development].

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